View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_54 (Length: 321)

Name: NF1590_low_54
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_54
NF1590_low_54
[»] chr6 (21 HSPs)
chr6 (146-292)||(24154321-24154467)
chr6 (144-295)||(10163414-10163564)
chr6 (176-292)||(13003014-13003130)
chr6 (182-304)||(34992141-34992262)
chr6 (182-304)||(28712162-28712283)
chr6 (7-70)||(24154182-24154245)
chr6 (146-248)||(11744381-11744483)
chr6 (192-288)||(4031245-4031341)
chr6 (7-71)||(10163277-10163341)
chr6 (7-71)||(13002859-13002923)
chr6 (182-288)||(242233-242338)
chr6 (182-289)||(16142354-16142461)
chr6 (182-272)||(6038782-6038872)
chr6 (7-71)||(17352721-17352783)
chr6 (182-289)||(18713519-18713626)
chr6 (237-292)||(14767091-14767146)
chr6 (7-58)||(28712405-28712456)
chr6 (182-292)||(17296404-17296514)
chr6 (7-71)||(11744558-11744625)
chr6 (21-58)||(16143184-16143221)
chr6 (7-71)||(19723897-19723959)
[»] chr8 (31 HSPs)
chr8 (148-292)||(15341077-15341221)
chr8 (148-292)||(15430142-15430286)
chr8 (148-292)||(15521446-15521590)
chr8 (1-71)||(6017561-6017631)
chr8 (182-294)||(18847222-18847334)
chr8 (180-279)||(22455303-22455402)
chr8 (145-213)||(6017419-6017487)
chr8 (182-294)||(22450260-22450372)
chr8 (182-304)||(41652199-41652318)
chr8 (222-288)||(19709723-19709789)
chr8 (7-71)||(15340936-15341000)
chr8 (7-71)||(15430001-15430065)
chr8 (7-71)||(15521305-15521369)
chr8 (182-272)||(32351994-32352084)
chr8 (182-272)||(32368655-32368745)
chr8 (7-71)||(19709515-19709577)
chr8 (7-71)||(22450046-22450108)
chr8 (7-71)||(23355472-23355534)
chr8 (229-289)||(22713898-22713958)
chr8 (186-260)||(28862671-28862745)
chr8 (228-289)||(12669066-12669127)
chr8 (7-58)||(32352213-32352264)
chr8 (7-58)||(32368874-32368925)
chr8 (7-58)||(41652026-41652077)
chr8 (182-288)||(10600386-10600492)
chr8 (239-289)||(24681046-24681096)
chr8 (236-289)||(25094867-25094920)
chr8 (7-71)||(27123654-27123716)
chr8 (182-243)||(28291771-28291832)
chr8 (182-249)||(11030468-11030536)
chr8 (236-288)||(13110003-13110055)
[»] chr1 (14 HSPs)
chr1 (177-292)||(25018444-25018559)
chr1 (182-304)||(16083441-16083563)
chr1 (182-305)||(44787540-44787663)
chr1 (182-304)||(33379543-33379665)
chr1 (185-304)||(11821602-11821721)
chr1 (180-304)||(24633947-24634071)
chr1 (229-289)||(17615068-17615128)
chr1 (7-71)||(25018666-25018730)
chr1 (182-294)||(13966195-13966308)
chr1 (237-289)||(22608133-22608185)
chr1 (237-289)||(33102842-33102894)
chr1 (6-58)||(24633326-24633378)
chr1 (21-71)||(11821848-11821898)
chr1 (7-57)||(23455188-23455238)
[»] chr2 (19 HSPs)
chr2 (180-289)||(17162197-17162306)
chr2 (146-295)||(23388923-23389070)
chr2 (192-304)||(20515755-20515867)
chr2 (7-67)||(28760677-28760737)
chr2 (176-272)||(28760852-28760949)
chr2 (182-293)||(13370171-13370282)
chr2 (182-305)||(16467498-16467623)
chr2 (182-287)||(17636519-17636624)
chr2 (182-287)||(17676377-17676482)
chr2 (8-71)||(21498140-21498201)
chr2 (7-58)||(17636737-17636788)
chr2 (7-58)||(17676595-17676646)
chr2 (7-71)||(2482040-2482102)
chr2 (182-249)||(15438238-15438305)
chr2 (239-289)||(29891564-29891614)
chr2 (235-304)||(21498352-21498421)
chr2 (237-289)||(18929128-18929180)
chr2 (237-289)||(25520679-25520731)
chr2 (7-71)||(31404106-31404169)
[»] chr3 (19 HSPs)
chr3 (182-294)||(53589314-53589427)
chr3 (182-304)||(44451077-44451198)
chr3 (182-305)||(15987357-15987480)
chr3 (182-294)||(4022931-4023043)
chr3 (7-69)||(48896060-48896122)
chr3 (185-294)||(1744877-1744986)
chr3 (186-294)||(25466271-25466379)
chr3 (175-288)||(48895840-48895953)
chr3 (183-291)||(45280154-45280262)
chr3 (182-294)||(25320985-25321104)
chr3 (11-71)||(15987587-15987645)
chr3 (182-289)||(14132288-14132395)
chr3 (217-293)||(4026610-4026686)
chr3 (237-289)||(4765961-4766013)
chr3 (224-271)||(5495370-5495417)
chr3 (5-71)||(27717983-27718047)
chr3 (182-247)||(17132537-17132605)
chr3 (7-71)||(17439136-17439198)
chr3 (200-272)||(1085529-1085601)
[»] chr5 (15 HSPs)
chr5 (182-304)||(10235833-10235954)
chr5 (182-294)||(9422901-9423012)
chr5 (182-295)||(28619443-28619556)
chr5 (182-293)||(24364366-24364479)
chr5 (185-285)||(22987533-22987633)
chr5 (182-293)||(24308846-24308960)
chr5 (8-71)||(24663572-24663633)
chr5 (229-289)||(24878165-24878225)
chr5 (222-289)||(31533262-31533329)
chr5 (182-289)||(25667473-25667581)
chr5 (237-288)||(17167564-17167615)
chr5 (7-58)||(31533055-31533106)
chr5 (22-71)||(30985579-30985626)
chr5 (7-71)||(22987748-22987810)
chr5 (242-294)||(25951117-25951169)
[»] chr7 (12 HSPs)
chr7 (182-304)||(11994128-11994249)
chr7 (185-304)||(28036950-28037069)
chr7 (183-294)||(12468716-12468828)
chr7 (186-288)||(7524935-7525037)
chr7 (217-294)||(7948223-7948300)
chr7 (7-71)||(1545647-1545709)
chr7 (7-58)||(7524765-7524816)
chr7 (180-248)||(1545825-1545893)
chr7 (221-288)||(18046266-18046333)
chr7 (22-71)||(12468945-12468992)
chr7 (7-49)||(41131966-41132008)
chr7 (7-48)||(4978852-4978893)
[»] scaffold0003 (1 HSPs)
scaffold0003 (182-304)||(89551-89673)
[»] chr4 (10 HSPs)
chr4 (183-295)||(16288527-16288639)
chr4 (217-294)||(43851328-43851405)
chr4 (7-71)||(24924891-24924953)
chr4 (237-289)||(4732422-4732474)
chr4 (7-71)||(12424781-12424845)
chr4 (182-294)||(24924652-24924771)
chr4 (221-288)||(6337797-6337864)
chr4 (7-71)||(26654149-26654211)
chr4 (182-247)||(24476143-24476208)
chr4 (221-289)||(9354703-9354771)
[»] scaffold0431 (1 HSPs)
scaffold0431 (7-71)||(5130-5194)
[»] scaffold0039 (3 HSPs)
scaffold0039 (182-282)||(33440-33540)
scaffold0039 (1-58)||(48275-48333)
scaffold0039 (7-58)||(33275-33326)
[»] scaffold0167 (2 HSPs)
scaffold0167 (182-292)||(704-814)
scaffold0167 (7-58)||(10309-10360)
[»] scaffold0142 (1 HSPs)
scaffold0142 (236-289)||(20349-20402)
[»] scaffold0337 (1 HSPs)
scaffold0337 (182-289)||(4356-4464)
[»] scaffold0002 (1 HSPs)
scaffold0002 (239-289)||(376452-376502)
[»] scaffold0320 (1 HSPs)
scaffold0320 (11-58)||(6424-6471)
[»] scaffold0040 (1 HSPs)
scaffold0040 (7-54)||(26935-26982)
[»] scaffold0024 (2 HSPs)
scaffold0024 (7-58)||(38920-38971)
scaffold0024 (237-292)||(39168-39223)
[»] scaffold1102 (1 HSPs)
scaffold1102 (236-289)||(1172-1225)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 146 - 292
Target Start/End: Original strand, 24154321 - 24154467
Alignment:
Q  146 cgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaaca 245  Q
    ||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||||||    
T  24154321 cgaaaaacttttactttcatacaaaaaaccgttgtattcataaagcaacctatgaatatgatgaacactcatgaattttctggaaaaagattgcacaaca 24154420  T
Q  246 tgtcccagggtttctggtttgatcctgtttgtaataatcaaaactag 292  Q
     |||| ||| ||| ||||||||||||  |||||||||||||||||||    
T  24154421 agtcctaggatttatggtttgatcctacttgtaataatcaaaactag 24154467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 10163414 - 10163564
Alignment:
Q  144 gccgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaa 243  Q
    |||||||||| |||||||||||| |||| || ||| ||||||||||||| ||||||||||||||||| |||| || |||||||| ||| |||||||||||    
T  10163414 gccgaaagacgtttactttcatacaaaa-actgttttattcataaagcagcctatgaatatgatgaacactcatgaattttctggaaacagattgcacaa 10163512  T
Q  244 catgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtct 295  Q
    ||| ||  ||  ||||||||||||||||| ||||||||||||||||||||||    
T  10163513 catatcttagaatttctggtttgatcctgcttgtaataatcaaaactagtct 10163564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 13003014 - 13003130
Alignment:
Q  176 gttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgttt 275  Q
    |||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||||||| |||| | | ||||||||||||| ||| ||    
T  13003014 gttgtattcataaagcaacctatgaatatgatgaacgctcaggtattttctgaaaaaagattgcacaacaggtcctaagatttctggtttgattctgctt 13003113  T
Q  276 gtaataatcaaaactag 292  Q
    |||||||||||||||||    
T  13003114 gtaataatcaaaactag 13003130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 34992262 - 34992141
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||||||||||||||||||| | || |||||||| || ||||| ||||||||| || ||| ||| |||||| |||||||||| ||||||||    
T  34992262 ttcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaatattgcacaatat-tcctaggatttctgatttgatcctgcttgtaata 34992164  T
Q  282 atcaaaactagtctggttgttta 304  Q
    || ||||||||||  ||||||||    
T  34992163 attaaaactagtcatgttgttta 34992141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 28712283 - 28712162
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||||||||||||| ||||| | || |  | ||| || |||||||||||||||||||||| ||| |||||||||||||| ||  |||||||    
T  28712283 ttcataaagcaacctatgaatattatgaacattcatacactttatggaaaaagattgcacaacatgtcctaggatttctggtttgatcttgcctgtaata 28712184  T
Q  282 atcaaaactagtctggttgttta 304  Q
    ||| |||||||||| ||||||||    
T  28712183 atc-aaactagtctcgttgttta 28712162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 24154182 - 24154245
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgc 70  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24154182 aaagagtcatacaaaatgtatgtaaactgatttgtcgaaccacctttacatttaaatgcaatgc 24154245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 11744483 - 11744381
Alignment:
Q  146 cgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaaca 245  Q
    |||||||| |||||||||||| |||| ||||||||||||||||| |||||||| ||||||||||| |||   ||||||| |||||| |||| | ||||||    
T  11744483 cgaaagacttttactttcatacaaaaaaccgttgtattcataaaacaacctataaatatgatgaacactaaagtattttatgaaaagagatcgaacaaca 11744384  T
Q  246 tgt 248  Q
    |||    
T  11744383 tgt 11744381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 4031245 - 4031341
Alignment:
Q  192 aacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 288  Q
    ||||||||||||||||||| | ||| | | |||||  |||||||||||||||||||| | ||| |||||||||||||| || ||||| |||||||||    
T  4031245 aacctatgaatatgatgaacattcgagcactttctagaaaaagattgcacaacatgttctaggatttctggtttgatcatgcttgtagtaatcaaaa 4031341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 10163277 - 10163341
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||||   ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  10163277 aaagagtcatatagaatgtatgtaaactgatttgtcgaaccgcgtttacatttaaatgcaatgca 10163341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 13002859 - 13002923
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  13002859 aaagagtcatacagaatgtatgtaaactgatttgtcgaaccacctttacgtttaaatacaatgca 13002923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 242233 - 242338
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||| ||||||||||||||||||| | ||  | | |||||| ||||| |||||||||||||||| | || ||||||||||||| || ||||||||    
T  242233 ttcataaagtaacctatgaatatgatgaacattcaagcactttctggaaaaatattgcacaacatgtccta-ggattctggtttgatcttgcttgtaata 242331  T
Q  282 atcaaaa 288  Q
    | |||||    
T  242332 accaaaa 242338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 16142461 - 16142354
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    |||||||| |||||||||||| ||||||  ||||    | |||||| |||||  ||||||||||||||| ||| ||||| |||||||| |||||||||||    
T  16142461 ttcataaaccaacctatgaatctgatgaccactcactcactttctggaaaaactttgcacaacatgtcctaggatttctagtttgatcatgtttgtaata 16142362  T
Q  282 atcaaaac 289  Q
    | ||||||    
T  16142361 accaaaac 16142354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 6038872 - 6038782
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 272  Q
    |||||||||||| |||||||||||||||| | ||  | |||||||| ||||||||||||||| ||  || ||| ||||| |||||||||||    
T  6038872 ttcataaagcaaactatgaatatgatgaacattcaagcattttctggaaaaagattgcacaatattccctaggatttctagtttgatcctg 6038782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 17352783 - 17352721
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||||| |||||  ||||| ||||||||||||||||||||||||||  |||||||||||    
T  17352783 aaagagtcatacataatgcttgtaatctgatttgtcgaaccacatttacatt--aatgcaatgca 17352721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 18713626 - 18713519
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcg---tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgta 278  Q
    |||||||||| |||||||||| |||||||  | ||   |||||||||| |||||  ||||| |||||||||| ||| |||||||||||||| || |||||    
T  18713626 ttcataaagctacctatgaatttgatgaa--cgcgaactgtattttcttaaaaac-attgcgcaacatgtccaaggatttctggtttgatcttgcttgta 18713530  T
Q  279 ataatcaaaac 289  Q
    |||||||||||    
T  18713529 ataatcaaaac 18713519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 14767091 - 14767146
Alignment:
Q  237 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactag 292  Q
    |||||||||||||| ||  |||||||||||||| || |||||||||||||||||||    
T  14767091 tgcacaacatgtcctagaatttctggtttgatcgtgcttgtaataatcaaaactag 14767146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 28712456 - 28712405
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    |||||||||||  |||||||||||| ||||||||||||||||| ||||||||    
T  28712456 aaagagtcatatataatgtatgtaatctgatttgtcgaaccacctttacatt 28712405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 292
Target Start/End: Original strand, 17296404 - 17296514
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||||| ||||| |||||||  |||    || ||||| |||||  |||||||||||||   ||| ||||| ||||||||||| ||||||||    
T  17296404 ttcataaagcaacctctgaatttgatgaacgctcactcatattctggaaaaaatttgcacaacatgttgtaggatttcttgtttgatcctgattgtaata 17296503  T
Q  282 atcaaaactag 292  Q
    | |||||||||    
T  17296504 accaaaactag 17296514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 11744625 - 11744558
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccac---atttacatttaaatgcaatgca 71  Q
    ||||||||||||  ||| ||| ||||||||||||| |||||||   ||||||||||||||||||||||    
T  11744625 aaagagtcatacagaatctatataaactgatttgttgaaccacctaatttacatttaaatgcaatgca 11744558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 16143221 - 16143184
Alignment:
Q  21 aatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  16143221 aatgtatgtaatctgatttgtcgaaccacctttacatt 16143184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 19723897 - 19723959
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||||| |||||||||||| ||||||||  |||| || ||||||||  |||||||||||    
T  19723897 aaagagtcatacataatgtatgtaatctgatttgatgaactacctttacatt--aatgcaatgca 19723959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 148 - 292
Target Start/End: Original strand, 15341077 - 15341221
Alignment:
Q  148 aaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 247  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||| |||    
T  15341077 aaagacatttactttcatacaaaatatcgttgtattcataaagcaacctatgaatatgatgaacactcatgtattttctggaaaatgattgcacaatatg 15341176  T
Q  248 tcccagggtttctggtttgatcctgtttgtaataatcaaaactag 292  Q
    ||  ||| ||| ||||||||||||  ||||||| |||||||||||    
T  15341177 tcataggatttttggtttgatcctacttgtaattatcaaaactag 15341221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 148 - 292
Target Start/End: Original strand, 15430142 - 15430286
Alignment:
Q  148 aaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 247  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||| |||    
T  15430142 aaagacatttactttcatacaaaatatcgttgtattcataaagcaacctatgaatatgatgaacactcatgtattttctggaaaatgattgcacaatatg 15430241  T
Q  248 tcccagggtttctggtttgatcctgtttgtaataatcaaaactag 292  Q
    ||  ||| ||| ||||||||||||  ||||||| |||||||||||    
T  15430242 tcataggatttttggtttgatcctacttgtaattatcaaaactag 15430286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 148 - 292
Target Start/End: Original strand, 15521446 - 15521590
Alignment:
Q  148 aaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 247  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||| |||    
T  15521446 aaagacatttactttcatacaaaatatcgttgtattcataaagcaacctatgaatatgatgaacactcatgtattttctggaaaatgattgcacaatatg 15521545  T
Q  248 tcccagggtttctggtttgatcctgtttgtaataatcaaaactag 292  Q
    ||  ||| ||| ||||||||||||  ||||||| |||||||||||    
T  15521546 tcataggatttttggtttgatcctacttgtaattatcaaaactag 15521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6017631 - 6017561
Alignment:
Q  1 ctagagaaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6017631 ctagagaaagagtcatacataatgtatgtaaactgatttgtcgaactacatttacatttaaatgcaatgca 6017561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 18847334 - 18847222
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    |||||||||||||||||||||||  |||| | || |||||||| || |||||||||||||||||||||  ||| ||||| ||||||||||  ||||||||    
T  18847334 ttcataaagcaacctatgaatatattgaacattcatgtattttttggaaaaagattgcacaacatgtcataggatttctagtttgatccttcttgtaata 18847235  T
Q  282 atcaaaactagtc 294  Q
    |||||||||||||    
T  18847234 atcaaaactagtc 18847222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 22455303 - 22455402
Alignment:
Q  180 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 279  Q
    ||||||||||||||||||||||||||||||| | || |||| ||| || |||||||||||||||||| ||| ||| ||||||||||||||||| ||||||    
T  22455303 tattcataaagcaacctatgaatatgatgaacattcatgtactttttggaaaaagattgcacaacatatcctaggatttctggtttgatcctgcttgtaa 22455402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 6017487 - 6017419
Alignment:
Q  145 ccgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatac 213  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||    
T  6017487 ccgaaagacatttactttcatataaaagatcgttgtattcataaagcaacctatgaatataataaatac 6017419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 22450260 - 22450372
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    |||||||| |||||||||||||||||||| | || |  | ||| || |||||||||||| |||||||| |||| ||| |||||||||| || ||||||||    
T  22450260 ttcataaaacaacctatgaatatgatgaagattcatacaatttttggaaaaagattgcataacatgtcacaggatttatggtttgatcttgcttgtaata 22450359  T
Q  282 atcaaaactagtc 294  Q
    |||||||||||||    
T  22450360 atcaaaactagtc 22450372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 41652199 - 41652318
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||||||||||||||||||| | ||    | |||||  |||||||||||||||  ||||  | | ||||||||||||||||| ||||||||    
T  41652199 ttcataaagcaacctatgaatatgatgaacattccac-actttcttgaaaaagattgcacaa--tgtcatatgatttctggtttgatcctgcttgtaata 41652295  T
Q  282 atcaaaactagtctggttgttta 304  Q
    |||||||||||||| ||||||||    
T  41652296 atcaaaactagtcttgttgttta 41652318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 19709723 - 19709789
Alignment:
Q  222 tttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 288  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||||||||||    
T  19709723 tttctgaaaaaagattgcacaacatgtcctaggatttatggtttgatcctgcttgcaataatcaaaa 19709789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 15340936 - 15341000
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  |||||||||||||||||||||| |||||| ||||| || ||||||||||||    
T  15340936 aaagagtcatacagaatgtatgtaaactgatttgtcaaaccacctttacgttgaaatgcaatgca 15341000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 15430001 - 15430065
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  |||||||||||||||||||||| |||||| ||||| || ||||||||||||    
T  15430001 aaagagtcatacagaatgtatgtaaactgatttgtcaaaccacctttacgttgaaatgcaatgca 15430065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 15521305 - 15521369
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  |||||||||||||||||||||| |||||| ||||| || ||||||||||||    
T  15521305 aaagagtcatacagaatgtatgtaaactgatttgtcaaaccacctttacgttgaaatgcaatgca 15521369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 32352084 - 32351994
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 272  Q
    ||||||||  ||||||||||||||| ||| | || |||||||| |  ||||||||  |||||||||||| ||| |||||||||||||||||    
T  32352084 ttcataaattaacctatgaatatgacgaacattcatgtattttatagaaaaagatgtcacaacatgtcctaggatttctggtttgatcctg 32351994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 32368745 - 32368655
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 272  Q
    ||||||||  ||||||||||||||| ||| | || |||||||| |  ||||||||  |||||||||||| ||| |||||||||||||||||    
T  32368745 ttcataaattaacctatgaatatgacgaacattcatgtattttatagaaaaagatgtcacaacatgtcctaggatttctggtttgatcctg 32368655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 19709515 - 19709577
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||||  ||||||||||||  |||||||||||||||||||||||||  |||||||||||    
T  19709515 aaagagtcatagataatgtatgtaatttgatttgtcgaaccacatttacatt--aatgcaatgca 19709577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 22450046 - 22450108
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||| |||||  |||||||||||    
T  22450046 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacattaacatt--aatgcaatgca 22450108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 23355534 - 23355472
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  23355534 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacatt--aatgcaatgca 23355472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 22713898 - 22713958
Alignment:
Q  229 aaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    ||||| ||| |||||||||| | ||||||||||||||||||||| |||||||||| |||||    
T  22713898 aaaaacatttcacaacatgttctagggtttctggtttgatcctgcttgtaataataaaaac 22713958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 28862671 - 28862745
Alignment:
Q  186 taaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttct 260  Q
    ||||| || |||||||||||||||| | || |||||||| ||||||| |||||||||||||| || ||| |||||    
T  28862671 taaagtaaactatgaatatgatgaacattcatgtattttgtgaaaaacgattgcacaacatgccctaggatttct 28862745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 12669066 - 12669127
Alignment:
Q  228 aaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    ||||| || |||||||||||| | | | ||||||||||||||||| ||||||||||||||||    
T  12669066 aaaaacgaatgcacaacatgttctatgatttctggtttgatcctgcttgtaataatcaaaac 12669127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 32352264 - 32352213
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    ||||||||||||  |||||||||||  |||||||||||||||| ||||||||    
T  32352264 aaagagtcatacaaaatgtatgtaatatgatttgtcgaaccacttttacatt 32352213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 32368925 - 32368874
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    ||||||||||||  |||||||||||  |||||||||||||||| ||||||||    
T  32368925 aaagagtcatacaaaatgtatgtaatatgatttgtcgaaccacttttacatt 32368874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 41652026 - 41652077
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    ||||||||||||  |||||||||||  |||||||||||||||| ||||||||    
T  41652026 aaagagtcatacagaatgtatgtaatttgatttgtcgaaccacctttacatt 41652077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 10600386 - 10600492
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||| ||||||||||| |||||||  ||||   ||||| || ||||| ||| |||||||||||| | | |||||| | ||||| || ||||||||    
T  10600386 ttcataaagtaacctatgaatttgatgaaagctcgctcattttatggaaaaacattacacaacatgtcctacgatttctgctatgatcatgcttgtaata 10600485  T
Q  282 atcaaaa 288  Q
    | |||||    
T  10600486 accaaaa 10600492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 24681046 - 24681096
Alignment:
Q  239 cacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||  ||| ||||||||||||| ||| ||||||||||||||||    
T  24681046 cacaacatgtcataggatttctggtttgattctgcttgtaataatcaaaac 24681096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 25094920 - 25094867
Alignment:
Q  236 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||| || ||  ||||||||||||||||| ||||||||||| ||||    
T  25094920 ttgcacaacatgccctagaatttctggtttgatcctgcttgtaataatctaaac 25094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 27123654 - 27123716
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||| |||| |||||||||||| ||||||| ||||||||| |||  |||| |||||||||||    
T  27123654 aaagagttatacataatgtatgtaatctgatttatcgaaccaccttt--attttaatgcaatgca 27123716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 28291771 - 28291832
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaa 243  Q
    ||||||||| ||||||||||||||||||| | |  || ||||| || |||||||||||||||    
T  28291771 ttcataaagtaacctatgaatatgatgaacatttatgcattttatggaaaaagattgcacaa 28291832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 11030536 - 11030468
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct-gaaaaaagattgcacaacatgtc 249  Q
    ||||||||||||||||||||| ||| ||| |||||   ||||||| ||||||  |||||||||||||||    
T  11030536 ttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 11030468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 13110055 - 13110003
Alignment:
Q  236 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 288  Q
    ||||||||||||||| ||| ||||||||||||| ||  ||||||||| |||||    
T  13110055 ttgcacaacatgtcctaggatttctggtttgatgctacttgtaataaccaaaa 13110003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 25018559 - 25018444
Alignment:
Q  177 ttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttg 276  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||||||||||||||| ||| |||||||||||||| || |||    
T  25018559 ttgtattcataaagcaacctatgaatatgatgaacactcgcgtattttctagaaaaagattgcacaacatgtcctaggatttctggtttgatcatgcttg 25018460  T
Q  277 taataatcaaaactag 292  Q
    ||||||||||||||||    
T  25018459 taataatcaaaactag 25018444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 16083563 - 16083441
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||||||||||| ||||||| | |  | |||||| || |||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  16083563 ttcataaagcaacctatgaatttgatgaacattaatctattttatggaaaaagattgcataacatgtcctagggtttctggtttgatcctgtttgtaata 16083464  T
Q  282 atcaaaactagtctggttgttta 304  Q
    |||||||||||||| ||||||||    
T  16083463 atcaaaactagtcttgttgttta 16083441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 305
Target Start/End: Original strand, 44787540 - 44787663
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||| ||||||||||||||| | || | | |||  ||||||||||||||||||||||||  | | ||| ||||||||||||  ||||||||    
T  44787540 ttcataaagcaacttatgaatatgatgaacattcatatctttcttgaaaaaagattgcacaacatgtcatatgatttatggtttgatcctagttgtaata 44787639  T
Q  282 atcaaaactagtctggttgtttat 305  Q
    |||||||||||||| |||||||||    
T  44787640 atcaaaactagtcttgttgtttat 44787663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 33379543 - 33379665
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    |||||||||||||||||| |||||||||| | || | || ||| |||||||||||||||||| |||||| | | |||||| |||| ||||| ||||||||    
T  33379543 ttcataaagcaacctatggatatgatgaacattcatatactttatgaaaaaagattgcacaatatgtcctaagatttctgatttggtcctgcttgtaata 33379642  T
Q  282 atcaaaactagtctggttgttta 304  Q
    |||||||||| ||| ||||||||    
T  33379643 atcaaaactaatcttgttgttta 33379665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 11821721 - 11821602
Alignment:
Q  185 ataaagcaacctatgaatatgatgaat----actcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 280  Q
    |||||||||||||||||||||||||||    | || |||||||| ||||||||||||||||||| ||||| | | ||||||||||||  |   |||||||    
T  11821721 ataaagcaacctatgaatatgatgaatgaatattcatgtattttatgaaaaaagattgcacaacttgtccta-gatttctggtttgaatc---ttgtaat 11821626  T
Q  281 aatcaaaactagtctggttgttta 304  Q
    ||||||||||||||  ||||||||    
T  11821625 aatcaaaactagtcatgttgttta 11821602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 304
Target Start/End: Original strand, 24633947 - 24634071
Alignment:
Q  180 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 279  Q
    ||||||| ||| ||||||||||||||||||| | || |  | |||||  ||||| |||||| ||||||||  ||| ||| |||| |||||||| ||||||    
T  24633947 tattcatcaagaaacctatgaatatgatgaacattcatacaatttctagaaaaaaattgcataacatgtcaaaggatttatggtgtgatcctgcttgtaa 24634046  T
Q  280 taatcaaaactagtctggttgttta 304  Q
    ||||||||||||||||  |||||||    
T  24634047 taatcaaaactagtcttattgttta 24634071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 17615128 - 17615068
Alignment:
Q  229 aaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||| |||||    
T  17615128 aaaaacattgcacaacatgtcctaggatttctggtttgatcctgcttgtaataattaaaac 17615068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 25018730 - 25018666
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  |||||||||||||| ||||| |||||||| |||| ||||||||||||||||    
T  25018730 aaagagtcatacaaaatgtatgtaaactaatttgccgaaccacctttatatttaaatgcaatgca 25018666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 13966308 - 13966195
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgca-caacatgtcccagggtttctggtttgatcctgtttgtaat 280  Q
    |||||||| |||||||||||||||||||| | || |||||||| |  |||||||||| | |||||| ||  | | ||||||||||||||||| ||  |||    
T  13966308 ttcataaaacaacctatgaatatgatgaacattcatgtattttttagaaaaagattgtaccaacatttcataagatttctggtttgatcctgcttagaat 13966209  T
Q  281 aatcaaaactagtc 294  Q
    ||||| ||||||||    
T  13966208 aatcataactagtc 13966195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 22608133 - 22608185
Alignment:
Q  237 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||| ||||    
T  22608133 tgcacaacatgtcctaggatttctggtttgatcatgtttgtaataatcgaaac 22608185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 33102894 - 33102842
Alignment:
Q  237 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||||| | | ||||||||||||||||| ||||||||||||||||    
T  33102894 tgcacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaac 33102842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 24633326 - 24633378
Alignment:
Q  6 gaaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||  ||||||||    
T  24633326 gaaagagtcatacataatgtatgtaatctgatttgtagaaccaactttacatt 24633378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 11821898 - 11821848
Alignment:
Q  21 aatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||||  |||||| ||||||||| |||||||| ||||||||||||    
T  11821898 aatgtatgtaacttgatttatcgaaccacctttacattcaaatgcaatgca 11821848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 23455238 - 23455188
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacat 57  Q
    ||||||||||||  |||||||||||  |||||||||||||||| |||||||    
T  23455238 aaagagtcatacaaaatgtatgtaatatgatttgtcgaaccacctttacat 23455188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 17162197 - 17162306
Alignment:
Q  180 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 279  Q
    ||||||||||||||||||||||||||||||| | || |||||||| || |||||||||||||||||||||  ||| ||||||||||||||||| ||||||    
T  17162197 tattcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaagattgcacaacatgtcataggatttctggtttgatcctgcttgtaa 17162296  T
Q  280 taatcaaaac 289  Q
    ||||||||||    
T  17162297 taatcaaaac 17162306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 23389070 - 23388923
Alignment:
Q  146 cgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaaca 245  Q
    ||||||||||| ||||||||  |||| |  ||||||||  ||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||||||||    
T  23389070 cgaaagacatt-actttcatgcaaaaaattgttgtatttgtaaagcaacctatgaatatgatgaacactcgcgtattcttt-aaaaaagattgcacaaca 23388973  T
Q  246 tgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtct 295  Q
    ||||| ||| |||||||||||||| || ||||||||||||||||||||||    
T  23388972 tgtcctaggatttctggtttgatcatgcttgtaataatcaaaactagtct 23388923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 20515755 - 20515867
Alignment:
Q  192 aacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaacta 291  Q
    ||||||||||||||||||| | || |  | |||||| ||||||||| |||||||||||| | | ||||||||||||||||| ||||||||||||||||||    
T  20515755 aacctatgaatatgatgaacattcatacactttctggaaaaagattacacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaacta 20515854  T
Q  292 gtctggttgttta 304  Q
    ||||  |||||||    
T  20515855 gtcttattgttta 20515867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 28760677 - 28760737
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaa 67  Q
    |||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||    
T  28760677 aaagagtcatatagaatgtatgtaaactgatttgtcgaaccacctttacatttaaatgcaa 28760737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 28760852 - 28760949
Alignment:
Q  176 gttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttct-gaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 272  Q
    ||||||||||| | ||||||||||||||||||||||||||  | ||||||| || |||||||| ||||||| | |||| | ||||| |||||||||||    
T  28760852 gttgtattcattaggcaacctatgaatatgatgaatactcacgcattttctggataaaagattacacaacaagacccaagatttctagtttgatcctg 28760949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 13370282 - 13370171
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||  || |||||||||||||||| | ||   |||||| || |||||||||||||||||||| | ||  |||||| |||||||||| ||||||||    
T  13370282 ttcataaaataaactatgaatatgatgaacattcacatattttttggaaaaagattgcacaacatgttctagaatttctgatttgatcctgcttgtaata 13370183  T
Q  282 atcaaaactagt 293  Q
    || |||| ||||    
T  13370182 attaaaattagt 13370171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 305
Target Start/End: Original strand, 16467498 - 16467623
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctg--aaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 279  Q
    |||||||| ||| |||||| ||||||||| | ||||| ||||| ||  |||||| ||||||||| |||||| | | ||||||||||||||  | ||||||    
T  16467498 ttcataaaacaaactatgagtatgatgaacattcgtgcattttttggaaaaaaatattgcacaatatgtcctatgatttctggtttgatctcgcttgtaa 16467597  T
Q  280 taatcaaaactagtctggttgtttat 305  Q
    |||| || ||||||||  ||||||||    
T  16467598 taataaacactagtcttattgtttat 16467623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 17636624 - 17636519
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||| |||| || ||||||| ||||    | ||||||||||||  |||||||| || ||| ||| ||||||||||||||||| ||||||||    
T  17636624 ttcataaagcaacttatggatctgatgaacactcactcactttctgaaaaaactttgcacaatatatcctaggatttctggtttgatcctgcttgtaata 17636525  T
Q  282 atcaaa 287  Q
    | ||||    
T  17636524 accaaa 17636519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 17676482 - 17676377
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||| |||| || ||||||| ||||    | ||||||||||||  |||||||| || ||| ||| ||||||||||||||||| ||||||||    
T  17676482 ttcataaagcaacttatggatctgatgaacactcactcactttctgaaaaaactttgcacaatatatcctaggatttctggtttgatcctgcttgtaata 17676383  T
Q  282 atcaaa 287  Q
    | ||||    
T  17676382 accaaa 17676377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 21498140 - 21498201
Alignment:
Q  8 aagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  21498140 aagagtcatacataacgtatgtaatctgatttgtcgaaccacttttacatt--aatgcaatgca 21498201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 17636788 - 17636737
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| ||||||||    
T  17636788 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacatt 17636737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 17676646 - 17676595
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| ||||||||    
T  17676646 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacatt 17676595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 2482102 - 2482040
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||| |||||||||||  |||||||||||||||  ||||||||  |||||||||||    
T  2482102 aaagagtcatacggaatgtatgtaatttgatttgtcgaaccatctttacatt--aatgcaatgca 2482040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 15438238 - 15438305
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtc 249  Q
    |||||||||||||||| |||  |||| || | || |  ||||||||||||||||||||||||||||||    
T  15438238 ttcataaagcaacctaagaacttgattaacattcatacattttctgaaaaaagattgcacaacatgtc 15438305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 29891564 - 29891614
Alignment:
Q  239 cacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||| ||| ||| ||||||||||||| ||||||||| ||||||    
T  29891564 cacaacatgtcctaggatttatggtttgatcctgcttgtaataaccaaaac 29891614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 21498352 - 21498421
Alignment:
Q  235 attgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtctggttgttta 304  Q
    |||||||||||| ||  ||| ||||| |||||| | || |||||||||||||| |||||||| |||||||    
T  21498352 attgcacaacatatcataggatttctagtttgaccgtgcttgtaataatcaaagctagtctgcttgttta 21498421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 18929180 - 18929128
Alignment:
Q  237 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||||| ||| | ||||||||| ||||| | ||||||||||||||    
T  18929180 tgcacaacatgtcctaggatctctggtttggtcctgctcgtaataatcaaaac 18929128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 25520679 - 25520731
Alignment:
Q  237 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||||| ||| |||  |||||||||||| ||||||||| ||||||    
T  25520679 tgcacaacatgtcctaggattttgggtttgatcctgcttgtaataaccaaaac 25520731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 31404106 - 31404169
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||| ||||  |||||||||||| |||||||||||||||| |||  |||| |||||||||||    
T  31404106 aaagagttatacagaatgtatgtaaaatgatttgtcgaaccaccttt-tattttaatgcaatgca 31404169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 53589314 - 53589427
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaa-aagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 280  Q
    ||||||||||||| ||||||||||||||| | || ||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||  |||||||    
T  53589314 ttcataaagcaacatatgaatatgatgaacattcatgtattttctgaaaaaaagattgcacaaaatgtcctaggatttctggtttgatcctacttgtaat 53589413  T
Q  281 aatcaaaactagtc 294  Q
    ||||||||||||||    
T  53589414 aatcaaaactagtc 53589427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 44451077 - 44451198
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||||||||||||||||||| | || |||||||| || ||||||||||||||| || ||| ||| |||||| ||||||| || ||||||||    
T  44451077 ttcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaagattgcacaatat-tcctaggatttctgatttgatcttgcttgtaata 44451175  T
Q  282 atcaaaactagtctggttgttta 304  Q
    |||||||||||||  ||||||||    
T  44451176 atcaaaactagtcatgttgttta 44451198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 305
Target Start/End: Complemental strand, 15987480 - 15987357
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    |||||||||||||||||||| |||||||| | || | |||||| || |||||||||||||||||||||| ||  ||||| ||||||||||  ||||||||    
T  15987480 ttcataaagcaacctatgaaaatgatgaacattcatatattttatggaaaaagattgcacaacatgtcctagaatttctagtttgatcctacttgtaata 15987381  T
Q  282 atcaaaactagtctggttgtttat 305  Q
    | |||||||| ||| |||||||||    
T  15987380 accaaaactaatcttgttgtttat 15987357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 4022931 - 4023043
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    |||||||| |||||||||||||||||||| | || |||||||| |  |||||||||||||||||||||  | |  |||||||||||||||| ||||||||    
T  4022931 ttcataaaacaacctatgaatatgatgaacattcatgtattttttagaaaaagattgcacaacatgtcataagaattctggtttgatcctgcttgtaata 4023030  T
Q  282 atcaaaactagtc 294  Q
    |||| || |||||    
T  4023031 atcataaatagtc 4023043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 48896122 - 48896060
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatg 69  Q
    |||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  48896122 aaagagtcatacataatgtatgtaaactggtttgtcgaaccacctttacatttaaatgcaatg 48896060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 1744986 - 1744877
Alignment:
Q  185 ataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatc 284  Q
    |||||||||||||| ||||||||||| | || |  ||||| ||||||||||||||||||||| ||| | | |||||  ||| ||||| ||||||||||||    
T  1744986 ataaagcaacctataaatatgatgaacattcatacattttttgaaaaaagattgcacaacatatcctaagatttctaatttaatcctatttgtaataatc 1744887  T
Q  285 aaaactagtc 294  Q
    ||||||||||    
T  1744886 aaaactagtc 1744877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 25466379 - 25466271
Alignment:
Q  186 taaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatca 285  Q
    |||| |||||||||||||||||||| | || | ||||||||   ||||||||||| ||||||||| ||| |||   ||||||||||| ||||||||||||    
T  25466379 taaaacaacctatgaatatgatgaacattcatatattttctaggaaaagattgcaaaacatgtcctaggattttcagtttgatcctgcttgtaataatca 25466280  T
Q  286 aaactagtc 294  Q
    |||||||||    
T  25466279 aaactagtc 25466271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 48895953 - 48895840
Alignment:
Q  175 cgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtt 274  Q
    |||||||||||||||||||| |||||||||||| || ||||    ||||| || |||||||||||||| ||||||| |   ||||| ||||||||||| |    
T  48895953 cgttgtattcataaagcaacgtatgaatatgataaacactcacacattttttggaaaaagattgcacatcatgtcctaaaatttctagtttgatcctgct 48895854  T
Q  275 tgtaataatcaaaa 288  Q
    ||||||||| ||||    
T  48895853 tgtaataataaaaa 48895840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 291
Target Start/End: Original strand, 45280154 - 45280262
Alignment:
Q  183 tcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataa 282  Q
    |||||||||||||||||||||||||||| |    | ||||||||| |||||||||||||||||| ||| | | ||||| | |||||| |  |||||||||    
T  45280154 tcataaagcaacctatgaatatgatgaacatatatatattttctggaaaaagattgcacaacatatcctacgatttctaggttgatcgttcttgtaataa 45280253  T
Q  283 tcaaaacta 291  Q
    |||||||||    
T  45280254 tcaaaacta 45280262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 25321104 - 25320985
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaa-------aaaagattgcacaacatgtcccagggtttctggtttgatcctgtt 274  Q
    ||||||||||||||||||||||||||||| | || |  ||||| ||||       ||||||||||||||||||||| | | ||| |||||||| | || |    
T  25321104 ttcataaagcaacctatgaatatgatgaacattcatacattttttgaagaaaaaaaaaagattgcacaacatgtcctacgatttttggtttgaccatgct 25321005  T
Q  275 tgtaataatcaaaactagtc 294  Q
    ||||||||||||||||||||    
T  25321004 tgtaataatcaaaactagtc 25320985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 15987645 - 15987587
Alignment:
Q  11 agtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  15987645 agtcatacaaaatgtatgtaatctgatttgtcgaaccacatttacatt--aatgcaatgca 15987587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 14132288 - 14132395
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||| ||||||||||| ||||||| | ||    | ||| || ||||| ||||||||||||||||  || ||||| ||||||||||| ||||||||    
T  14132288 ttcataaagaaacctatgaatttgatgaacattcactcactttttggaaaaacattgcacaacatgtccttggatttctagtttgatcctgcttgtaata 14132387  T
Q  282 atcaaaac 289  Q
    | ||||||    
T  14132388 accaaaac 14132395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 4026610 - 4026686
Alignment:
Q  217 tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagt 293  Q
    |||||||| || |||||||||| |||| |||||| |   |||||||||||||| || || |||||||||||||||||    
T  4026610 tgtattttatggaaaaagattgtacaatatgtcctaaaatttctggtttgatcttgcttataataatcaaaactagt 4026686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 4765961 - 4766013
Alignment:
Q  237 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||||| ||| ||||||||||| ||||| ||||||||| ||||||    
T  4765961 tgcacaacatgtcctaggatttctggtttgttcctgcttgtaataaccaaaac 4766013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 5495417 - 5495370
Alignment:
Q  224 tctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcct 271  Q
    ||||||||||  ||||||||||||||| ||| ||||||||||||||||    
T  5495417 tctgaaaaaactttgcacaacatgtcctaggatttctggtttgatcct 5495370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 27717983 - 27718047
Alignment:
Q  5 agaaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||| ||||  ||||||||||| ||||||| ||||||||| ||||||||  |||||||||||    
T  27717983 agaaagagttatacagaatgtatgtaatctgatttatcgaaccacctttacatt--aatgcaatgca 27718047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 17132605 - 17132537
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct---gaaaaaagattgcacaacatg 247  Q
    ||||||||| || |||||||||||||||||| || ||||||||||    ||||||||||||| ||||||    
T  17132605 ttcataaaggaaactatgaatatgatgaatattcatgtattttctataaaaaaaagattgcataacatg 17132537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 17439136 - 17439198
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||||   ||| ||||||| |||||||||||||| |||||||||||  |||||||||||    
T  17439136 aaagagtcatataaaatatatgtaatctgatttgtcgaactacatttacatt--aatgcaatgca 17439198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 1085601 - 1085529
Alignment:
Q  200 aatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 272  Q
    ||||||||||| | || | ||||||||  ||||  |||||||||||||||| ||| ||||| |||||||||||    
T  1085601 aatatgatgaacattcatatattttctagaaaatcattgcacaacatgtcctaggatttctagtttgatcctg 1085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 10235954 - 10235833
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    |||||||||||| ||||||| |||||||| | || |||||||| || |||||||||||||||||||||| ||  |||||||||||||| || ||||||||    
T  10235954 ttcataaagcaaactatgaa-atgatgaacattcatgtattttttggaaaaagattgcacaacatgtcctagaatttctggtttgatcatgcttgtaata 10235856  T
Q  282 atcaaaactagtctggttgttta 304  Q
    ||||||||||||||  |||||||    
T  10235855 atcaaaactagtcttattgttta 10235833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 9423012 - 9422901
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||| ||||||||||||||||||| | || |||||||| || ||||||||||||||| || ||| ||| |||||| |||||||||| ||||||||    
T  9423012 ttcataaagtaacctatgaatatgatgaacattcatgtattttatggaaaaagattgcacaatat-tcctaggatttctgatttgatcctgcttgtaata 9422914  T
Q  282 atcaaaactagtc 294  Q
    |||||||||||||    
T  9422913 atcaaaactagtc 9422901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 28619443 - 28619556
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||| ||||||||||||||| | ||    |||||||| |||| ||||||||||||||||| | | ||||||||||||||||| ||||||||    
T  28619443 ttcataaagcaacttatgaatatgatgaacattcacacattttctggaaaaggattgcacaacatgtcctatgatttctggtttgatcctgcttgtaata 28619542  T
Q  282 atcaaaactagtct 295  Q
    || |||||||||||    
T  28619543 attaaaactagtct 28619556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 293
Target Start/End: Original strand, 24364366 - 24364479
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct--gaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 279  Q
    |||||||||||||||||||||||||||||   ||    ||||| |  |||||||||||||| ||||||| | ||| || |||||||||||||| ||||||    
T  24364366 ttcataaagcaacctatgaatatgatgaacgttcacacatttttttggaaaaaagattgcagaacatgttctaggattcctggtttgatcctgcttgtaa 24364465  T
Q  280 taatcaaaactagt 293  Q
    ||||||||||||||    
T  24364466 taatcaaaactagt 24364479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 22987633 - 22987533
Alignment:
Q  185 ataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatc 284  Q
    |||||||||||||||||||||||||| | ||    | |||||| |||||||||||||||||||||  | | ||||| ||||||||||| |||| ||||||    
T  22987633 ataaagcaacctatgaatatgatgaacattcacacactttctggaaaaagattgcacaacatgtcatatgatttctagtttgatcctgcttgttataatc 22987534  T
Q  285 a 285  Q
    |    
T  22987533 a 22987533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 24308960 - 24308846
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct--gaaaaaaga-ttgcacaacatgtcccagggtttctggtttgatcctgtttgta 278  Q
    |||||||||||||||||||||||||||||   ||    ||||| |  ||||||||| ||||| ||||||| | ||| || |||||||||||||| |||||    
T  24308960 ttcataaagcaacctatgaatatgatgaacgttcacacatttttttggaaaaaagaattgcagaacatgttctaggattcctggtttgatcctgcttgta 24308861  T
Q  279 ataatcaaaactagt 293  Q
    |||||||||||||||    
T  24308860 ataatcaaaactagt 24308846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 24663633 - 24663572
Alignment:
Q  8 aagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||| |||||||||||| ||||||||| ||||||| ||||||||  |||||||||||    
T  24663633 aagagtcatacataatgtatgtaatctgatttgttgaaccacctttacatt--aatgcaatgca 24663572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 24878225 - 24878165
Alignment:
Q  229 aaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    ||||| |||||||||||||||| ||| |||||| |||||||||| |||||||||| |||||    
T  24878225 aaaaacattgcacaacatgtcctaggatttctgctttgatcctgcttgtaataattaaaac 24878165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 31533262 - 31533329
Alignment:
Q  222 tttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    ||||||||||||  ||||||||||||||| ||| |||| |||| ||||||| ||||||||| ||||||    
T  31533262 tttctgaaaaaactttgcacaacatgtcctaggatttcgggttcgatcctgcttgtaataaccaaaac 31533329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 25667473 - 25667581
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaa-gattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 280  Q
    ||||||||||||||||||||| |||||||  |||    ||||||||||||||  |||||||||||  ||| | | ||| | ||||||||||| |||||||    
T  25667473 ttcataaagcaacctatgaatttgatgaactctcactcattttctgaaaaaaccattgcacaacagctcctaagatttttagtttgatcctgcttgtaat 25667572  T
Q  281 aatcaaaac 289  Q
    || ||||||    
T  25667573 aaccaaaac 25667581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 17167564 - 17167615
Alignment:
Q  237 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 288  Q
    |||||||||||||| ||| ||| |||||| |||||| |||||||||||||||    
T  17167564 tgcacaacatgtcctaggatttatggttttatcctgcttgtaataatcaaaa 17167615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 31533055 - 31533106
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    |||||||||||   ||||||||||| ||||||||||||||||| ||||||||    
T  31533055 aaagagtcatagagaatgtatgtaatctgatttgtcgaaccacctttacatt 31533106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 30985579 - 30985626
Alignment:
Q  22 atgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||| |||||||||||||||||||||  |||| |||||||||||    
T  30985579 atgtatgtaatctgatttgtcgaaccacattt--attttaatgcaatgca 30985626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 22987810 - 22987748
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||| |||||||  ||||||||||| ||||| ||||||||||| ||||||||  |||||||||||    
T  22987810 aaagtgtcatacaaaatgtatgtaatctgatatgtcgaaccacctttacatt--aatgcaatgca 22987748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 25951169 - 25951117
Alignment:
Q  242 aacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtc 294  Q
    ||||||||| ||| | ||||||||||||||| |||| |||||||| |||||||    
T  25951169 aacatgtcctaggatctctggtttgatcctgcttgttataatcaatactagtc 25951117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 11994128 - 11994249
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||||||||||||||||||| | || |||||||| || ||||| ||||||||| || ||| ||| |||||| |||||||||| ||||||||    
T  11994128 ttcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaatattgcacaatat-tcctaggatttctgatttgatcctgcttgtaata 11994226  T
Q  282 atcaaaactagtctggttgttta 304  Q
    || ||||||||||  ||||||||    
T  11994227 ataaaaactagtcatgttgttta 11994249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 28037069 - 28036950
Alignment:
Q  185 ataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatc 284  Q
    |||||||||||||||||||||||||| | || |  | ||||| ||||||||||||||||||| ||| | | |||||| |||||||||  |||||||||||    
T  28037069 ataaagcaacctatgaatatgatgaacattcatacactttctaaaaaaagattgcacaacatatcctaagatttctgatttgatcctacttgtaataatc 28036970  T
Q  285 aaaactagtctggttgttta 304  Q
    ||||||||| | ||||||||    
T  28036969 aaaactagttttgttgttta 28036950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 12468828 - 12468716
Alignment:
Q  183 tcataaagcaacctatgaatatgatgaatactcgtgtattttctg-aaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||  |||||||||||||||| | || | |||||| || ||||||||||||| ||||||||| ||| ||||||| |||| | || ||||||||    
T  12468828 tcataaagcagtctatgaatatgatgaacattcatatattttatggaaaaaagattgcataacatgtcctaggatttctggattgaccatgcttgtaata 12468729  T
Q  282 atcaaaactagtc 294  Q
    |||||||||||||    
T  12468728 atcaaaactagtc 12468716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 288
Target Start/End: Original strand, 7524935 - 7525037
Alignment:
Q  186 taaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatca 285  Q
    ||||||||||||||||| ||||||| ||||   || |||||||||||| ||||| || ||||||  ||| ||||||||||||||||  ||||||||| ||    
T  7524935 taaagcaacctatgaatttgatgaacactcacttactttctgaaaaaacattgcgcaccatgtcttaggatttctggtttgatcctacttgtaataacca 7525034  T
Q  286 aaa 288  Q
    |||    
T  7525035 aaa 7525037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 7948223 - 7948300
Alignment:
Q  217 tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtc 294  Q
    |||||||| || |||||||||||||  | ||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  7948223 tgtattttatggaaaaagattgcacgccgtgtcctaggatttatggtttgatcctgtttgtaataatcaagactagtc 7948300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 1545647 - 1545709
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  ||||||| ||| ||||||||||||||||||||||||||  |||||||||||    
T  1545647 aaagagtcatacaaaatgtatataatctgatttgtcgaaccacatttacatt--aatgcaatgca 1545709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 7524765 - 7524816
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| ||||||||    
T  7524765 aaagagtcatacataatttatgtaatctgatttgtcgaaccacctttacatt 7524816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 1545825 - 1545893
Alignment:
Q  180 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgt 248  Q
    |||||||||| |||| ||||||||| ||||| | |  |||||||||| |||||||||||||||| ||||    
T  1545825 tattcataaaacaacttatgaatataatgaacatttatgtattttctaaaaaaagattgcacaatatgt 1545893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 18046333 - 18046266
Alignment:
Q  221 ttttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 288  Q
    ||||||| |||||  ||||||||||||||| ||  ||||| ||||||||||| ||||||||| |||||    
T  18046333 ttttctggaaaaactttgcacaacatgtcctagtatttctagtttgatcctgcttgtaataaccaaaa 18046266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 12468992 - 12468945
Alignment:
Q  22 atgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||| |||||||||||||||||||||||  || |||||||||||    
T  12468992 atgtatgtaatctgatttgtcgaaccacatttac--tttaatgcaatgca 12468945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 41132008 - 41131966
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccac 49  Q
    ||||||||||||  ||||||||||| |||||||||||||||||    
T  41132008 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccac 41131966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 4978852 - 4978893
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaacca 48  Q
    |||||||||||| ||||| |||||| ||||||||||||||||    
T  4978852 aaagagtcatacataatgcatgtaatctgatttgtcgaacca 4978893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 89673 - 89551
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    |||||||| |||||||||||||||||||| | || | |||||| || ||||||||||| ||| |||||| ||| |||||| ||| |||||  ||||||||    
T  89673 ttcataaaacaacctatgaatatgatgaacattcatatattttatggaaaaagattgcgcaatatgtcctaggatttctgctttaatcctccttgtaata 89574  T
Q  282 atcaaaactagtctggttgttta 304  Q
    ||||||||||||||  |||||||    
T  89573 atcaaaactagtcttattgttta 89551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 16288639 - 16288527
Alignment:
Q  183 tcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataa 282  Q
    ||||||| |||||||||||| ||||||| | || |  | |||||| |||||||||||||||||||||  | |||||||||||| ||  |||||||| |||    
T  16288639 tcataaaacaacctatgaatttgatgaacaatcatacactttctggaaaaagattgcacaacatgtctgaaggtttctggtttaatgttgtttgtattaa 16288540  T
Q  283 tcaaaactagtct 295  Q
    |||||||||||||    
T  16288539 tcaaaactagtct 16288527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 43851405 - 43851328
Alignment:
Q  217 tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtc 294  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||| ||| |||||| |||||||||| ||||| ||||    
T  43851405 tgtattttctgaaaaaagattgcgcaacatgtcctaggatttctgattttatcctgcttgtaataataaaaacaagtc 43851328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 24924953 - 24924891
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||||| |||||||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  24924953 aaagagtcatacataatgtatgtaatctgatttgtcgaaccacctttacatt--aatgcaatgca 24924891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 4732474 - 4732422
Alignment:
Q  237 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  4732474 tgcacaacatgtcctaggatttctggtttgatcctgtttgtaataaccaaaac 4732422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 12424845 - 12424781
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  |||||||||||||  |||||||||||||| ||||||||||||||| |||||    
T  12424845 aaagagtcatacaaaatgtatgtaaaccaatttgtcgaaccacctttacatttaaatgcgatgca 12424781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 24924771 - 24924652
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaa-------aaaagattgcacaacatgtcccagggtttctggtttgatcctgtt 274  Q
    ||||||||||||||| ||||||||||||| | |  |||||||||||||       |||| |||| |||| |||||| ||  |||||||||||||| || |    
T  24924771 ttcataaagcaacctgtgaatatgatgaacatttatgtattttctgaacaaacaaaaaaaattgtacaatatgtcctagtatttctggtttgatcatgct 24924672  T
Q  275 tgtaataatcaaaactagtc 294  Q
    | ||||||||||||||||||    
T  24924671 tataataatcaaaactagtc 24924652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 6337864 - 6337797
Alignment:
Q  221 ttttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 288  Q
    |||||||||||||  ||||||||||||||| | | ||||||||||||| |||| |||||||| |||||    
T  6337864 ttttctgaaaaaactttgcacaacatgtcctaagatttctggtttgattctgtctgtaataaccaaaa 6337797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 26654149 - 26654211
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    |||||||||||| ||||||||||||  |||||||||||||||| ||| ||||  |||||||||||    
T  26654149 aaagagtcatacataatgtatgtaatatgatttgtcgaaccacctttgcatt--aatgcaatgca 26654211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 24476208 - 24476143
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 247  Q
    |||||||||||| |||||| ||||||||| | ||    |||||||| |||||||||||||||||||    
T  24476208 ttcataaagcaaactatgactatgatgaacattcaaacattttctggaaaaagattgcacaacatg 24476143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 9354703 - 9354771
Alignment:
Q  221 ttttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    ||||||| ||||| |||||||||||||||| |   |||||||||||||| ||  |||||||| ||||||    
T  9354703 ttttctggaaaaacattgcacaacatgtcctataatttctggtttgatcatgaatgtaataaccaaaac 9354771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 5130 - 5194
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 71  Q
    ||||||||||||  |||||||||||||  |||||||||||||| ||||||||||||||| |||||    
T  5130 aaagagtcatacaaaatgtatgtaaaccaatttgtcgaaccacctttacatttaaatgcgatgca 5194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 282
Target Start/End: Original strand, 33440 - 33540
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||||||||| | ||||||| ||||    | |||||| |||||  ||||||||||||||  ||| ||||||||||||||||| ||||||||    
T  33440 ttcataaagcaacctatgagtctgatgaacactcactcactttctggaaaaactttgcacaacatgtcataggatttctggtttgatcctgcttgtaata 33539  T
Q  282 a 282  Q
    |    
T  33540 a 33540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48333 - 48275
Alignment:
Q  1 ctagagaa-agagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    |||||||| ||||||||||  ||||||||||| ||||||||||||||||| ||||||||    
T  48333 ctagagaatagagtcatacagaatgtatgtaatctgatttgtcgaaccacttttacatt 48275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 33275 - 33326
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    |||||||||||| ||||||||||||  ||| |||||||||||| ||||||||    
T  33275 aaagagtcatacataatgtatgtaatatgaattgtcgaaccacttttacatt 33326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 292
Target Start/End: Original strand, 704 - 814
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 281  Q
    ||||||||||||||||||||  || | || | || |  ||||| || |||||||||||||||||||||| ||| ||||| |||||| | || ||||||||    
T  704 ttcataaagcaacctatgaacttggttaacattcatacattttatggaaaaagattgcacaacatgtcctaggatttctagtttgaacttgcttgtaata 803  T
Q  282 atcaaaactag 292  Q
    |||||| ||||    
T  804 atcaaagctag 814  T

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Target: scaffold0167; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 10309 - 10360
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    |||||||||||| |||||||||||| |||||||||| |||||| ||||||||    
T  10309 aaagagtcatacataatgtatgtaatctgatttgtcaaaccacctttacatt 10360  T

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Target: scaffold0142 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 20402 - 20349
Alignment:
Q  236 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    ||||||||||||||||| | ||||||||||||||||| ||||||||| ||||||    
T  20402 ttgcacaacatgtcccaagatttctggtttgatcctgcttgtaataaccaaaac 20349  T

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Target: scaffold0337 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 4464 - 4356
Alignment:
Q  182 ttcataaagcaacctatgaatatgatgaatactcg-tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 280  Q
    ||||||||||||||||||||| |||||||  |    | |||||||| |||||  | | ||||||| |||| ||| ||||||||||||||||| |||||||    
T  4464 ttcataaagcaacctatgaatttgatgaacgcaaactctattttcttaaaaacaaatccacaacacgtcctaggatttctggtttgatcctgcttgtaat 4365  T
Q  281 aatcaaaac 289  Q
    |||||||||    
T  4364 aatcaaaac 4356  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 376452 - 376502
Alignment:
Q  239 cacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    |||||||||||| ||| ||||||||||||||||  ||||||||||||||||    
T  376452 cacaacatgtcctaggatttctggtttgatcctccttgtaataatcaaaac 376502  T

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Target: scaffold0320 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 6471 - 6424
Alignment:
Q  11 agtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    |||||||| |||||||||||| ||||||||||||||| | ||||||||    
T  6471 agtcatacataatgtatgtaatctgatttgtcgaaccgcctttacatt 6424  T

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Target: scaffold0040 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 26935 - 26982
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacattta 54  Q
    |||||||||||| |||||||||||| || |||||||||||||| ||||    
T  26935 aaagagtcatacataatgtatgtaatctaatttgtcgaaccaccttta 26982  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 38920 - 38971
Alignment:
Q  7 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 58  Q
    |||||||||||   ||||||||||| ||||||||||||||||| ||||||||    
T  38920 aaagagtcatataaaatgtatgtaatctgatttgtcgaaccacctttacatt 38971  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 39168 - 39223
Alignment:
Q  237 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactag 292  Q
    |||||||||||||| | | ||||| ||||||||||| ||||||||| |||||||||    
T  39168 tgcacaacatgtcctaagatttctagtttgatcctgcttgtaataaccaaaactag 39223  T

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Target: scaffold1102 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 1172 - 1225
Alignment:
Q  236 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 289  Q
    ||||||||||||||| ||  |||||||||||||| || ||||||||| ||||||    
T  1172 ttgcacaacatgtcctagaatttctggtttgatcttgcttgtaataaccaaaac 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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