View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_56 (Length: 319)

Name: NF1590_low_56
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_56
NF1590_low_56
[»] chr5 (6 HSPs)
chr5 (20-304)||(2210657-2210928)
chr5 (18-91)||(2198427-2198500)
chr5 (246-304)||(2198575-2198633)
chr5 (198-227)||(37455439-37455468)
chr5 (170-198)||(34384702-34384730)
chr5 (199-227)||(41330455-41330483)
[»] chr8 (2 HSPs)
chr8 (170-227)||(1961372-1961427)
chr8 (199-227)||(16983484-16983512)
[»] chr1 (2 HSPs)
chr1 (170-199)||(22540504-22540533)
chr1 (199-227)||(30678973-30679001)
[»] chr7 (3 HSPs)
chr7 (199-227)||(31502526-31502554)
chr7 (199-227)||(44350864-44350892)
chr7 (199-227)||(46517381-46517409)
[»] chr4 (2 HSPs)
chr4 (170-198)||(19447273-19447301)
chr4 (199-227)||(50164485-50164513)
[»] chr3 (1 HSPs)
chr3 (199-227)||(29388656-29388684)
[»] chr2 (1 HSPs)
chr2 (162-198)||(38464304-38464340)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 2210657 - 2210928
Alignment:
Q  20 tttcgatgcaaatcaatgttcatttca---attttccatgtcgatttcatactgtcatgacttgagttgaatttattcgttccttatttaatcttcattt 116  Q
    |||||||||||||| || |||||||||   |||||  ||||  |||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  2210657 tttcgatgcaaatctatattcatttcatcaatttt--atgtgaatttgatagtgtgatgacttgagttgaagttattcgttccttatttaatcttcattt 2210754  T
Q  117 cnnnnnnnncttctt-ctatgtacataattagtagattgagtaagactagctatactctcttttgaacactctctttaatactattgtg--agtctacac 213  Q
    |         ||||| ||||||||||||||||||||||||||||||||||||| |||||||            ||||||||||||||||  |||||||||    
T  2210755 cattt-----ttctttctatgtacataattagtagattgagtaagactagctacactctct------------ctttaatactattgtgtgagtctacac 2210837  T
Q  214 tttgaaaattgaactagatcatattctgtttatttaaattattttaattttcgttgaatttttatgctaatttgcaaatcatagctctctg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210838 tttgaaaattgaactagatcatattctgtttatttaaattattttaattttcgttgaatttttatgctaatttgcaaatcatagctctctg 2210928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 2198427 - 2198500
Alignment:
Q  18 agtttcgatgcaaatcaatgttcatttcaattttccatgtcgatttcatactgtcatgacttgagttgaattta 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2198427 agtttcgatgcaaatcaatgttcatttcaattttccatgtcgatttcatagtgtcatgacttgagttgaattta 2198500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 2198575 - 2198633
Alignment:
Q  246 tttaaattattttaattttcgttgaatttttatgctaatttgcaaatcatagctctctg 304  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  2198575 tttaatttaatttaattttcgtttaatttttatgctaattttcaaatcagagctctctg 2198633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 37455468 - 37455439
Alignment:
Q  198 tattgtgagtctacactttgaaaattgaac 227  Q
    ||||||||||||||||||||||||||||||    
T  37455468 tattgtgagtctacactttgaaaattgaac 37455439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 34384702 - 34384730
Alignment:
Q  170 actctcttttgaacactctctttaatact 198  Q
    |||||||||||||||||||||||||||||    
T  34384702 actctcttttgaacactctctttaatact 34384730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 41330455 - 41330483
Alignment:
Q  199 attgtgagtctacactttgaaaattgaac 227  Q
    |||||||||||||||||||||||||||||    
T  41330455 attgtgagtctacactttgaaaattgaac 41330483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 1961427 - 1961372
Alignment:
Q  170 actctcttttgaacactctctttaatactattgtgagtctacactttgaaaattgaac 227  Q
    ||||||||||||||||||||| ||||  ||||||  ||||||||||||||||||||||    
T  1961427 actctcttttgaacactctctctaat--tattgttggtctacactttgaaaattgaac 1961372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 16983512 - 16983484
Alignment:
Q  199 attgtgagtctacactttgaaaattgaac 227  Q
    |||||||||||||||||||||||||||||    
T  16983512 attgtgagtctacactttgaaaattgaac 16983484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 22540533 - 22540504
Alignment:
Q  170 actctcttttgaacactctctttaatacta 199  Q
    ||||||||||||||||||||||||||||||    
T  22540533 actctcttttgaacactctctttaatacta 22540504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 30678973 - 30679001
Alignment:
Q  199 attgtgagtctacactttgaaaattgaac 227  Q
    |||||||||||||||||||||||||||||    
T  30678973 attgtgagtctacactttgaaaattgaac 30679001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 31502526 - 31502554
Alignment:
Q  199 attgtgagtctacactttgaaaattgaac 227  Q
    |||||||||||||||||||||||||||||    
T  31502526 attgtgagtctacactttgaaaattgaac 31502554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 44350864 - 44350892
Alignment:
Q  199 attgtgagtctacactttgaaaattgaac 227  Q
    |||||||||||||||||||||||||||||    
T  44350864 attgtgagtctacactttgaaaattgaac 44350892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 46517409 - 46517381
Alignment:
Q  199 attgtgagtctacactttgaaaattgaac 227  Q
    |||||||||||||||||||||||||||||    
T  46517409 attgtgagtctacactttgaaaattgaac 46517381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 19447301 - 19447273
Alignment:
Q  170 actctcttttgaacactctctttaatact 198  Q
    |||||||||||||||||||||||||||||    
T  19447301 actctcttttgaacactctctttaatact 19447273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 50164513 - 50164485
Alignment:
Q  199 attgtgagtctacactttgaaaattgaac 227  Q
    |||||||||||||||||||||||||||||    
T  50164513 attgtgagtctacactttgaaaattgaac 50164485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 29388656 - 29388684
Alignment:
Q  199 attgtgagtctacactttgaaaattgaac 227  Q
    |||||||||||||||||||||||||||||    
T  29388656 attgtgagtctacactttgaaaattgaac 29388684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 38464340 - 38464304
Alignment:
Q  162 ctagctatactctcttttgaacactctctttaatact 198  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  38464340 ctagcaatactctcttttgaacactctctctaatact 38464304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University