View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_57 (Length: 316)

Name: NF1590_low_57
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_57
NF1590_low_57
[»] chr6 (3 HSPs)
chr6 (17-301)||(34693872-34694156)
chr6 (131-206)||(34697645-34697720)
chr6 (131-203)||(34720416-34720488)
[»] chr2 (12 HSPs)
chr2 (17-301)||(26991614-26991898)
chr2 (204-301)||(27031523-27031621)
chr2 (131-206)||(26995305-26995380)
chr2 (140-206)||(27064684-27064750)
chr2 (26-92)||(27072634-27072700)
chr2 (131-206)||(27013291-27013366)
chr2 (48-125)||(27032110-27032189)
chr2 (131-182)||(27032026-27032077)
chr2 (50-93)||(27064639-27064682)
chr2 (36-125)||(27013166-27013258)
chr2 (204-265)||(27073296-27073356)
chr2 (228-274)||(4307504-4307550)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 34694156 - 34693872
Alignment:
Q  17 gtgtatttaggactaaatttcatttagaaaccatgaacataactttcattatttaggactattatgaaactcttttctgttcttattgttctgtttttaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34694156 gtgtatttaggactaaatttcatttagaaaccatgaacataactttcattatttaggactattatgaaactcttttctgttcttattgttctgtttttaa 34694057  T
Q  117 agtacttcataactttcattctttatttacgatacagtaaatatccacttgctatagttctagttggagttggtgatgaactttgggaagtgtaattaga 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34694056 agtacttcgtaactttcattctttatttacgatacagtaaatatccacttgctatagttctagttggagttggtgatgaactttgggaagtgtaattaga 34693957  T
Q  217 taattaactatgacaattacctgtctaacaagtaattgcacagtctagtaactaactagttaagcttgtaatccactatgttttt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34693956 taattaactatgacaattacctgtctaacaagtaattgcacagtctagtaactaactagttaagcttgtaatccactatgttttt 34693872  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 34697720 - 34697645
Alignment:
Q  131 ttcattctttatttacgatacagtaaatatccacttgctatagttctagttggagttggtgatgaactttgggaag 206  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||    
T  34697720 ttcattccttatttatgatacagtaaatatccacttgctatagttctggttggagttggtgatggaccttgggaag 34697645  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 34720416 - 34720488
Alignment:
Q  131 ttcattctttatttacgatacagtaaatatccacttgctatagttctagttggagttggtgatgaactttggg 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||| || |||||    
T  34720416 ttcattctttatctacgatacagtaaatatccacttgctatagttttggtcggagttggtgatggaccttggg 34720488  T

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Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 26991898 - 26991614
Alignment:
Q  17 gtgtatttaggactaaatttcatttagaaaccatgaacataactttcattatttaggactattatgaaactcttttctgttcttattgttctgtttttaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26991898 gtgtatttaggactaaatttcatttagaaaccatgaacataactttcattatttaggactattatgaaactcttttctgttcttattgttctgtttttaa 26991799  T
Q  117 agtacttcataactttcattctttatttacgatacagtaaatatccacttgctatagttctagttggagttggtgatgaactttgggaagtgtaattaga 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26991798 agtacttcgtaactttcattctttatttacgatacagtaaatatccacttgctatagttctagttggagttggtgatgaactttgggaagtgtaattaga 26991699  T
Q  217 taattaactatgacaattacctgtctaacaagtaattgcacagtctagtaactaactagttaagcttgtaatccactatgttttt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26991698 taattaactatgacaattacctgtctaacaagtaattgcacagtctagtaactaactagttaagcttgtaatccactatgttttt 26991614  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 27031621 - 27031523
Alignment:
Q  204 aagtgtaattagataattaactatgacaattacctgtctaacaagtaattgcacagtctagtaactaac--tagttaagcttgtaatccactatgttttt 301  Q
    ||||||||||||||| ||||||  ||||||||| ||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  27031621 aagtgtaattagata-ttaacttagacaattacttgtgtaacaagtaattgcacagtctagtaactaactatagttaagcttgtaatccactatgttttt 27031523  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 26995380 - 26995305
Alignment:
Q  131 ttcattctttatttacgatacagtaaatatccacttgctatagttctagttggagttggtgatgaactttgggaag 206  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||    
T  26995380 ttcattccttatttatgatacagtaaatatccacttgctatagttctggttggagttggtgatggaccttgggaag 26995305  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 27064684 - 27064750
Alignment:
Q  140 tatttacgatacagtaaatatccacttgctatagttctagttggagttggtgatgaactttgggaag 206  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||||||    
T  27064684 tatttacgatacagtaaatatccacttgctatagttctggtcggagttggtgatggaccttgggaag 27064750  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 27072634 - 27072700
Alignment:
Q  26 ggactaaatttcatttagaaaccatgaacataactttcattatttaggactattatgaaactctttt 92  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  27072634 ggactaaatttcatttacaaaccatggacataactttctttatttaggactattatcaaactctttt 27072700  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 27013291 - 27013366
Alignment:
Q  131 ttcattctttatttacgatacagtaaatatccacttgctatagttctagttggagttggtgatgaactttgggaag 206  Q
    |||||||||||| || |||||||||||||||||||||||||||||||  | ||||||||||||| || ||||||||    
T  27013291 ttcattctttatctatgatacagtaaatatccacttgctatagttctgatcggagttggtgatggaccttgggaag 27013366  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 27032189 - 27032110
Alignment:
Q  48 catgaacataactttcattatttaggactattatgaaactctt--ttctgttcttattgttctgtttttaaagtacttca 125  Q
    |||| ||| ||||||||||||||||||||||||||| ||| ||  |||| ||| |||||||||||||||||| |||||||    
T  27032189 catgcacacaactttcattatttaggactattatgatactatttattcttttcctattgttctgtttttaaaatacttca 27032110  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 27032077 - 27032026
Alignment:
Q  131 ttcattctttatttacgatacagtaaatatccacttgctatagttctagttg 182  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||| ||||    
T  27032077 ttcactctttatttatgatacagtaaatatccacttgctatagttctggttg 27032026  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 27064639 - 27064682
Alignment:
Q  50 tgaacataactttcattatttaggactattatgaaactcttttc 93  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  27064639 tgaacatacctttcattatttaggactattatgaaactcttttc 27064682  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 27013166 - 27013258
Alignment:
Q  36 tcatttagaaaccatgaacataactttcattattta-ggactattatgaaactctt--ttctgttcttattgttctgtttttaaagtacttca 125  Q
    |||||||||||||||||||| || |||||||||||| |||||| |||||  || ||  |||| ||| |||||||||||||||| |||||||||    
T  27013166 tcatttagaaaccatgaacacaattttcattatttagggactaatatgatgctatttattcttttcctattgttctgtttttatagtacttca 27013258  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 27073296 - 27073356
Alignment:
Q  204 aagtgtaattagataattaactatgacaattacctgtctaacaagtaattgcacagtctagt 265  Q
    ||||||||||||||| ||||||  ||||||||| ||| ||||||||||||||||||||||||    
T  27073296 aagtgtaattagata-ttaacttagacaattacttgtgtaacaagtaattgcacagtctagt 27073356  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 4307550 - 4307504
Alignment:
Q  228 gacaattacctgtctaacaagtaattgcacagtctagtaactaacta 274  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  4307550 gacaattacttgtgtaacaagtaattgcagagtctagtaactaacta 4307504  T

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