View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_58 (Length: 312)
Name: NF1590_low_58
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 38123354 - 38123071
Alignment:
| Q |
19 |
cttcatgtacttaattatcatgtttgttgccattacaatgaaatttaagaattttattctcttgatttatttatttttccttttgaatacagaatattcg |
118 |
Q |
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| T |
38123354 |
cttcatgtacttaattatcatgtttgttgccattgcagtgaaatttaagaattttattctcttgatttatttatttttccttttgaatacagaatattcg |
38123255 |
T |
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| Q |
119 |
ttgccacttggaacgtggctgggaaatcacctccaagttatttaagtctggaagattggcttcacatttctccacctgctgatatctatgttcttgggta |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38123254 |
ttgccacttggaacgtggccgggaaatcacctccaagttatttaagtctggaagattggcttcacatttctccacatgctgatatctatgttcttgggta |
38123155 |
T |
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| Q |
219 |
atttagggattatataaagtgccatcatattctttagttaggnnnnnnngtttagaattcatcattatatttttgcatattctt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
38123154 |
atttagggattatataaagtgccatcatattctttagttaggaaaaaaagtttagaattcatcattatatttttgcattttctt |
38123071 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 31829340 - 31829411
Alignment:
| Q |
148 |
cctccaagttatttaagtctggaagattggcttcacatttctccacctgctgatatctatgttcttgggtaa |
219 |
Q |
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||||| |||||||||| |||||||||||||||||| | ||||| ||||||||||| |||||||| |||||| |
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| T |
31829340 |
cctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttctagggtaa |
31829411 |
T |
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