View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_60 (Length: 309)

Name: NF1590_low_60
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_60
NF1590_low_60
[»] chr5 (18 HSPs)
chr5 (15-293)||(8529394-8529672)
chr5 (16-293)||(8535958-8536235)
chr5 (24-258)||(9074118-9074352)
chr5 (23-293)||(1599679-1599949)
chr5 (31-149)||(8547470-8547588)
chr5 (28-141)||(2844435-2844548)
chr5 (28-141)||(2873878-2873991)
chr5 (28-221)||(2856268-2856464)
chr5 (24-147)||(8644833-8644956)
chr5 (28-226)||(2904384-2904585)
chr5 (169-227)||(8637396-8637454)
chr5 (178-221)||(2844594-2844637)
chr5 (181-221)||(8644747-8644787)
chr5 (178-221)||(2874031-2874074)
chr5 (188-227)||(11354043-11354082)
chr5 (188-227)||(11373311-11373350)
chr5 (264-293)||(8641837-8641866)
chr5 (94-138)||(9004088-9004132)
[»] chr4 (1 HSPs)
chr4 (15-293)||(9443555-9443833)
[»] chr7 (2 HSPs)
chr7 (15-293)||(48361223-48361501)
chr7 (35-293)||(35780270-35780544)
[»] chr6 (1 HSPs)
chr6 (24-150)||(16716982-16717108)
[»] scaffold0627 (1 HSPs)
scaffold0627 (36-141)||(5293-5398)
[»] chr1 (1 HSPs)
chr1 (201-291)||(5131226-5131316)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 8529672 - 8529394
Alignment:
Q  15 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8529672 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtc 8529573  T
Q  115 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529572 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 8529473  T
Q  215 ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaa 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8529472 ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaa 8529394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 8536235 - 8535958
Alignment:
Q  16 agagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtca 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8536235 agagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtca 8536136  T
Q  116 cgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaata 215  Q
    | |||||||| ||||||||||||||||||| | |  ||| || ||| ||||||| || ||| |||||||||||||| |||||||||||||||||||||||    
T  8536135 ctggggagtttataagacttcctgaatctattgcggatcaaaatcgggtaagaaggctaggacaagctggttttggtttccaacctaaaactaatgaata 8536036  T
Q  216 taaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaa 293  Q
    |||||| |||| | ||||| | ||||||||||||| |||||||  ||||| |||||||||| ||| ||||||||||||    
T  8536035 taaggtgataaacatgtgggtgagacatgttaaacgtgccaatgtgtgggagtttgagcgtttgacccttgagataaa 8535958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 9074118 - 9074352
Alignment:
Q  24 tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||   |||||||| | ||||||||||||||||||||| ||||||    
T  9074118 tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaacccttcagtgatctgcaacccagtcacaggggag 9074217  T
Q  124 ttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaa 223  Q
    |||||||||||||||||| |||| || ||||||||||| |||||||||  ||| |||| ||||||||||||||||||||| |||||||||||||||||||    
T  9074218 ttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtaggacaagttggttttggattccaacctaatactaatgaatataaggtaa 9074317  T
Q  224 taagcgtgtggataagacatgttaaacatgccaat 258  Q
    ||||  ||||||||||||||| ||||| |||||||    
T  9074318 taagaatgtggataagacatggtaaacgtgccaat 9074352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 1599679 - 1599949
Alignment:
Q  23 ttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacggggga 122  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||    
T  1599679 ttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgcaacccaatcactgggga 1599778  T
Q  123 gttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggta 222  Q
    ||||||||||||||||||||||||  | |||| |||||| ||| ||| |||||| | ||||| |||||| |||||||||||||||||||||||||||||     
T  1599779 gttcataagacttcctgaatctaccgcgaatcaaactcgggtaggaaggcaaggacgagctgcttttggtttccaacctaaaactaatgaatataaggtg 1599878  T
Q  223 ataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaa 293  Q
    |||| | || || | ||| ||||||||| |||||||  || || |||| ||  ||||||||||||||||||    
T  1599879 ataaacatgagggtgagatatgttaaacgtgccaatgcgttggagtttaagattgtgatccttgagataaa 1599949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 8547470 - 8547588
Alignment:
Q  31 tttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataa 130  Q
    |||||||||||||||||||||| ||| || |||||||||||||| ||| ||   |||||||| |||||||||||||| ||| |||| |||||||||||||    
T  8547470 tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa 8547569  T
Q  131 gacttcctgaatctactac 149  Q
    |||||| |||| |||||||    
T  8547570 gacttcttgaagctactac 8547588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 2844435 - 2844548
Alignment:
Q  28 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 127  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| ||||    
T  2844435 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca 2844534  T
Q  128 taagacttcctgaa 141  Q
     || ||||||||||    
T  2844535 caatacttcctgaa 2844548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 2873878 - 2873991
Alignment:
Q  28 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 127  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| ||||    
T  2873878 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca 2873977  T
Q  128 taagacttcctgaa 141  Q
     || ||||||||||    
T  2873978 caatacttcctgaa 2873991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 2856268 - 2856464
Alignment:
Q  28 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 127  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  ||||| | |||| ||| |||||||| ||||||||||| ||| |||| || |    
T  2856268 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattta 2856367  T
Q  128 taagacttcctgaatctactacaaat-cgaactcgagtaagaatgcaaggt--caagctggttttggattccaacctaaaactaatgaatataaggt 221  Q
     || ||||||||||  |||||| | | |  ||| |  ||| | |||  ||   |||||||||||||| |||||||| ||||||||||||||||||||    
T  2856368 caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtacaagctggttttggtttccaacccaaaactaatgaatataaggt 2856464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 8644956 - 8644833
Alignment:
Q  24 tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag 123  Q
    ||||||||||| | ||||||||||||||||||| || |||||||||  | | |||| |   ||||  |||||||| || ||||| |||||||| ||||||    
T  8644956 tgataagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggag 8644857  T
Q  124 ttcataagacttcctgaatctact 147  Q
    || |||||||||||| || |||||    
T  8644856 tttataagacttcctaaagctact 8644833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 2904384 - 2904585
Alignment:
Q  28 aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca 127  Q
    |||||||  |||||||||||||||||||| || |||||||| |||||  |||||   |||| ||| |||| ||| ||||||||||| ||| |||| ||||    
T  2904384 aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctaccggaagccctttagcgatttgcaacccagtaacgagggaattca 2904483  T
Q  128 taagacttcctgaatctactac-aaatcgaactcgagtaagaatgcaagg--tcaagctggttttggattccaacctaaaactaatgaatataaggtaat 224  Q
     || ||||||||||  |||||| |  ||  ||| |  ||| | |||  ||   |||||||||||||| |||||||| |||||||||||||||||||| ||    
T  2904484 caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtgcaagctggttttggtttccaacccaaaactaatgaatataaggtgat 2904583  T
Q  225 aa 226  Q
    ||    
T  2904584 aa 2904585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 8637454 - 8637396
Alignment:
Q  169 atgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataag 227  Q
    |||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  8637454 atgcgaggacaagttggttttggtttccaacctaaaactaatgaatataaggtgataag 8637396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 2844594 - 2844637
Alignment:
Q  178 caagctggttttggattccaacctaaaactaatgaatataaggt 221  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  2844594 caagctggttttggtttccaacccaaaactaatgaatataaggt 2844637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 8644787 - 8644747
Alignment:
Q  181 gctggttttggattccaacctaaaactaatgaatataaggt 221  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  8644787 gctgcttttggcttccaacctaaaactaatgaatataaggt 8644747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 2874031 - 2874074
Alignment:
Q  178 caagctggttttggattccaacctaaaactaatgaatataaggt 221  Q
    |||||||||||| | |||||||| ||||||||||||||||||||    
T  2874031 caagctggttttagtttccaacccaaaactaatgaatataaggt 2874074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 11354043 - 11354082
Alignment:
Q  188 ttggattccaacctaaaactaatgaatataaggtaataag 227  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  11354043 ttggcttccaacctaaaactaatgaatataaggtgataag 11354082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 11373350 - 11373311
Alignment:
Q  188 ttggattccaacctaaaactaatgaatataaggtaataag 227  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  11373350 ttggcttccaacctaaaactaatgaatataaggtgataag 11373311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 8641866 - 8641837
Alignment:
Q  264 ggtgtttgagcgtgtgatccttgagataaa 293  Q
    ||||||||||||||||||||||||||||||    
T  8641866 ggtgtttgagcgtgtgatccttgagataaa 8641837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 9004132 - 9004088
Alignment:
Q  94 ttagtgatctgcaacccagtcacgggggagttcataagacttcct 138  Q
    |||||| | |||||||||||||| ||||| |||||||||||||||    
T  9004132 ttagtggtatgcaacccagtcactggggaattcataagacttcct 9004088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 9443833 - 9443555
Alignment:
Q  15 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9443833 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtc 9443734  T
Q  115 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443733 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 9443634  T
Q  215 ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaa 293  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9443633 ataaggtaataagcgtgtggataagacatgttaaacaagccaatcagtgggtgtttgagcgtgtgatccttgagataaa 9443555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 48361223 - 48361501
Alignment:
Q  15 cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  48361223 cagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtgatctgcaacccagtc 48361322  T
Q  115 acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat 214  Q
    || |||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  48361323 acaggggagttcataagacttcctgaatctactgcgtatcgaactcgggtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaat 48361422  T
Q  215 ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaa 293  Q
    ||||||| |||| | ||||| | ||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||    
T  48361423 ataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgcgtgggagtttgagcgtgtgatccttgagataaa 48361501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 35 - 293
Target Start/End: Complemental strand, 35780544 - 35780270
Alignment:
Q  35 atattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaa-cccattagtgatctgcaacccagtcacgggggagttcataagac 133  Q
    ||||||| ||||||||||||||||| |||||||||||| | |||| |   | ||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  35780544 atattgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcataagac 35780445  T
Q  134 ttcctgaatctactacaaatc------ga------ac---tcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataa 218  Q
    |||||||| ||||||| | ||      ||      ||   |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  35780444 ttcctgaagctactacgactcctttaagattaaatacggatcgagtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaatataa 35780345  T
Q  219 ggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaa 293  Q
    ||| ||||   | ||||||||||||||| ||| ||||||| | ||||||||||| ||||| ||||| || |||||    
T  35780344 ggtgataaaaatatggataagacatgttcaacgtgccaatgattgggtgtttgatcgtgttatcctcgaaataaa 35780270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 16717108 - 16716982
Alignment:
Q  24 tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag 123  Q
    |||||||||| ||||||||||||| || ||||| || || ||||||||||| ||| ||  |||||||||  ||||||||||||||||| ||| ||||||     
T  16717108 tgataagtttaatattgtgaattcatgtaatggcttgctatgtttgtctgaaccaactactggaaaccctatagtgatctgcaacccattcatgggggaa 16717009  T
Q  124 ttcataagacttcctgaatctactaca 150  Q
    |||||||||||||||||| ||||||||    
T  16717008 ttcataagacttcctgaaactactaca 16716982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 5398 - 5293
Alignment:
Q  36 tattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataagactt 135  Q
    |||||||||||| || ||||| || || ||||||||| | ||| ||   |||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  5398 tattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagactt 5299  T
Q  136 cctgaa 141  Q
    ||||||    
T  5298 cctgaa 5293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 5131316 - 5131226
Alignment:
Q  201 taaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagata 291  Q
    ||||||||||||||||||||| ||||   | ||| |||| |||||||||| ||||  ||  |||| |||||||||||||||||||||||||    
T  5131316 taaaactaatgaatataaggtgataaaaatatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgatccttgagata 5131226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University