View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_62 (Length: 306)
Name: NF1590_low_62
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 9398911 - 9399165
Alignment:
| Q |
16 |
gaacctgtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactac |
115 |
Q |
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| T |
9398911 |
gaaccggtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactac |
9399010 |
T |
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| Q |
116 |
attgtctatttcttcacgagctttttgtaacaatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgct |
215 |
Q |
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| T |
9399011 |
attgtctatttcttcacgagctttttgtaacaatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgct |
9399110 |
T |
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| Q |
216 |
gtgaagaaatcctgtgaaacatctaaaattaaaagaattaattaatcatttactt |
270 |
Q |
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| T |
9399111 |
gtaaagaaatcctgtgaaacatatgaaattaaaagaattaattaatcattaactt |
9399165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 9381492 - 9381720
Alignment:
| Q |
22 |
gtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtc |
121 |
Q |
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| T |
9381492 |
gtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggaccgtcagattcatctactagtctatttttccctactatattgtc |
9381591 |
T |
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| Q |
122 |
tatttcttcacgagctttttgtaacaatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgctgtgaag |
221 |
Q |
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| T |
9381592 |
tatttcttcacgagctttttgtaataatgaagggttgttcattagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgctgtgaaa |
9381691 |
T |
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| Q |
222 |
aaatcctgtgaaacatctaaaattaaaag |
250 |
Q |
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| T |
9381692 |
aaatcctgtgaaacatacgaaattaaaag |
9381720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 23244478 - 23244271
Alignment:
| Q |
22 |
gtgggtgtagacgaaatgtttcttttattatggcttgaatataaggaagatttggtccgtcagattcatctactagtctgtttttccctactacattgtc |
121 |
Q |
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||||||| ||||||||||||||| |||| || ||||| | ||| || | ||||| ||| ||||| || ||| ||||||||| ||||||| ||||| |
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| T |
23244478 |
gtgggtgaagacgaaatgtttctcttatgattgcttgtagatatggcatatttgaaatgtcggattcttcaactgttctgtttttgcctactatgttgtc |
23244379 |
T |
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| Q |
122 |
tatttcttcacgagctttttgtaacaatgaagggttgttc-attagctcaactaatgcccattctgttgaaattgatgttgtgtctgttcctgctgtgaa |
220 |
Q |
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| T |
23244378 |
gatttcttcacgagctttttggagtaaagatgggtttttttatgagttctactaatgcccattctgttgatattgctgttgtatctgttcctgctgtgaa |
23244279 |
T |
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| Q |
221 |
gaaatcct |
228 |
Q |
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|||||||| |
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| T |
23244278 |
gaaatcct |
23244271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 23223331 - 23223371
Alignment:
| Q |
36 |
aatgtttcttttattatggcttgaatataaggaagatttgg |
76 |
Q |
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| T |
23223331 |
aatgtttcttttataatggcttgtatataaggaaggtttgg |
23223371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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