View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_63 (Length: 300)

Name: NF1590_low_63
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_63
NF1590_low_63
[»] chr3 (1 HSPs)
chr3 (9-300)||(40192649-40192943)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 40192649 - 40192943
Alignment:
Q  9 cataggtatcttaattttgaggaatggtttatgacagaaatatggcattaacaaaggagggtaacaattcgcccacccctccattctatgcaacttgcca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40192649 cataggtatcttaattttgaggaatggtttatgacagaaatatggcattaacaaaggagggtaacaattcgcccacccctccattctatgcaacttgcca 40192748  T
Q  109 tctagtgcatgggaaatgctaatagcataatatatttttcttatgctctgttcataattcatattcttaataatacag---taataaacatgagatgaag 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  40192749 tctagtgcatgggaaatgctaatagcataatatatttttcttatgctctgttcataattcatattcttaataatacagtaataataaacatgagatgaag 40192848  T
Q  206 aaagaaacaaaaatgtaccgataactctactgcattttattttgagcgtagaggattcggttcctgcttggcgaagaatatcacgtccttagtct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40192849 aaagaaacaaaaatgtaccgataactctactgcattttattttgagcgtagaggattcggttcctgcttggagaagaatatcacgtccttagtct 40192943  T

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