View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_low_66 (Length: 293)
Name: NF1590_low_66
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_66 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 258
Target Start/End: Original strand, 23035250 - 23035503
Alignment:
| Q |
6 |
tagattatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctgg |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23035250 |
tagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctgg |
23035349 |
T |
|
| Q |
106 |
ttatggaagcatagtgttcacttcttccgttgcaggtttaaaagctattcctgttttatctgtttatgcagccaccaaaggtatgtttccttttactt-a |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23035350 |
atatggaagcatagtgttcacttcttccgttgcaggtttaaaagctattcctgttttatctgtttatgcagccaccaaaggtatgtttccttttacttaa |
23035449 |
T |
|
| Q |
205 |
gaataatgaattttcatattgataataaaatttgagtatgagaaaagatgatag |
258 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23035450 |
gaatgatgaattttcatattgataataaaatttgagtatgagaaaagatgatag |
23035503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 23026446 - 23026634
Alignment:
| Q |
6 |
tagattatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctgg |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23026446 |
tagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctgg |
23026545 |
T |
|
| Q |
106 |
ttatggaagcatagtgttcacttcttccgttgcaggtttaaaagctattcctgttttatctgtttatgcagccaccaaaggtatgtttc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23026546 |
atatggaagcatagtgttcacttcttccgttgcaggtttaaaagctattcctgttttatctgtttatgcagccaccaaaggtatgtttc |
23026634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 23057773 - 23057917
Alignment:
| Q |
6 |
tagattatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctgg |
105 |
Q |
| |
|
|||| ||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||| | |||||||| ||| | || ||||||||||||||||| |
|
|
| T |
23057773 |
tagagtatactgctgaagatatagtaactacaatgggtacaaattttgagtctggttaccatctttgtcaactagcatacccacttctaaaagaatctgg |
23057872 |
T |
|
| Q |
106 |
ttatggaagcatagtgttcacttcttccgttgcaggtttaaaagc |
150 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
23057873 |
atatggaagcatagtgttcatatcttctgttggaggtttaaaagc |
23057917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 23091936 - 23092048
Alignment:
| Q |
8 |
gattatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggtt |
107 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
23091936 |
gattatactgatgaagatatagcatctacaattggtaccaattttgtgtctagttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggat |
23092035 |
T |
|
| Q |
108 |
atggaagcatagt |
120 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23092036 |
atggaagcatagt |
23092048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 23081038 - 23081147
Alignment:
| Q |
8 |
gattatactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggtt |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
23081038 |
gattatactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaa |
23081137 |
T |
|
| Q |
108 |
atggaagcat |
117 |
Q |
| |
|
|||||||||| |
|
|
| T |
23081138 |
atggaagcat |
23081147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 23069175 - 23069232
Alignment:
| Q |
60 |
gttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcat |
117 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||||||||||||| ||||| ||||| |
|
|
| T |
23069175 |
gttaccatttgtgtcaacttgcacacccacttttaaaagaatctggatatgggagcat |
23069232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 30790306 - 30790384
Alignment:
| Q |
64 |
ccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgcaggt |
142 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||||| |||| ||||| ||||||| ||| || ||||||||| |
|
|
| T |
30790306 |
ccatctgtgccaactttcacatcctcttctaaaagaatctggaaatggtagcattgtgttcatttcatctgttgcaggt |
30790384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 30706279 - 30706202
Alignment:
| Q |
62 |
taccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgca |
139 |
Q |
| |
|
|||||| | |||||||| ||| |||||||||| ||||||||||| |||||||||| ||||||| ||| || |||||| |
|
|
| T |
30706279 |
taccatctatgtcaactagcatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgca |
30706202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University