View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_67 (Length: 293)
Name: NF1590_low_67
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 11126907 - 11126636
Alignment:
| Q |
6 |
gagtgagaagaaatcaaaaacatgaaaggaaaggaggaagcggtgctgccactcacattaaagcacaatgaattgttttctttcagcccacacattgatg |
105 |
Q |
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| T |
11126907 |
gagtgaaaagaaatcaaaaacatgaaaggaaaggagcaagtggtgctgccactcatattaaagcacaatgaattgttttctttcagcccacacattgatg |
11126808 |
T |
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| Q |
106 |
aaatccattggaaacgttttcagcgtcatgggagccgccccgccatcaattgtggctgcacaatttcattccaaatcaatttgtaaccattttgcaatta |
205 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11126807 |
aaattcattggaaacgttttcagcatcatgggagccgccccaccatcaattgtggctgcacaatttcattccaaatcaaattgtaaccattttgcaatta |
11126708 |
T |
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| Q |
206 |
ttcaacactcgacattgatgttagactaatggctgaattctaagagttttcatgagttattttctttgatat |
277 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11126707 |
ttcaacacttggcattgatgttagactaatggctgaattctaagagttttcataagttattttctttgatat |
11126636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 25 - 277
Target Start/End: Original strand, 18445806 - 18446057
Alignment:
| Q |
25 |
acatgaaaggaaaggaggaagcggtgctgccactcacattaaagcacaatgaattgttttctttcagcccacacattgatgaaatccattggaaacgttt |
124 |
Q |
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|||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||||| |||| |||||| |
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| T |
18445806 |
acatgaaaggaaagaaggaagtggtgctgccac--aaattaaagcacaatgaattgttttctttcagcccactcattgaggaaatcagatggacacgttt |
18445903 |
T |
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| Q |
125 |
tcagcgtcatgggagccgccccgccatcaattgtggctgcacaatttcattccaaatcaatttgtaacca-ttttgcaattattcaacactcgacattga |
223 |
Q |
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| T |
18445904 |
tgagcatcttgagagccgccccaacatcaattatggttgcacaatttcattccaaatcaatttgtaaccatttttgcaattattcagcactagacattaa |
18446003 |
T |
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| Q |
224 |
tgttagactaatggctgaattctaagagttttcatgagttattttctttgatat |
277 |
Q |
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| T |
18446004 |
tgttagactaatggctgaattcttagagttttcatgagttattttctttgatat |
18446057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 277
Target Start/End: Complemental strand, 16019925 - 16019674
Alignment:
| Q |
25 |
acatgaaaggaaaggaggaagcggtgctgccactcacattaaagcacaatgaattgttttctttcagcccacacattgatgaaatccattggaaacgttt |
124 |
Q |
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|||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| |
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| T |
16019925 |
acatgaaaggaaagaatgaagtggtgctgccac--acattaaagcacaatgaattgttttctttcagcccacacattgaggaaatcagatggacacgttt |
16019828 |
T |
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| Q |
125 |
tcagcgtcatgggagccgccccgccatcaattgtggctgcacaatttcattccaaatcaatttgtaacca-ttttgcaattattcaacactcgacattga |
223 |
Q |
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| T |
16019827 |
tgagcatcttgagagccgccccaacatcaattataactgcacaaattcattctaaatcaatttgtaaccatttttgcaattattcagcactaggcattga |
16019728 |
T |
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| Q |
224 |
tgttagactaatggctgaattctaagagttttcatgagttattttctttgatat |
277 |
Q |
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||||||| |||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
16019727 |
tgttagaataatggttgaattctaacagttttcatgagttattttctttgatat |
16019674 |
T |
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