View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_69 (Length: 291)
Name: NF1590_low_69
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 128 - 273
Target Start/End: Original strand, 42579472 - 42579617
Alignment:
| Q |
128 |
ccaatatttagcccttaaacnnnnnnnnagtgttaacaatatataaaagctttggaattgtggtgaagcctcatgaacaaggacaccatttatctttact |
227 |
Q |
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| T |
42579472 |
ccaatatttagcccttaaacttttttttagtgttaacaatatataaaagctttggaattgtggtgaagcctcacgaacaaggataccatttatctttact |
42579571 |
T |
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| Q |
228 |
cttgacctaggttgcttcttctaagctcattcgcatagtcccaaat |
273 |
Q |
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| T |
42579572 |
cttgacctaggttgcttcttctaagctcattcgcatagtcccaaat |
42579617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 42579393 - 42579471
Alignment:
| Q |
9 |
gataattctggacacagacacaatttacattttcttgagtatgggattttttgtcatttgggaatatcatattctggct |
87 |
Q |
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| T |
42579393 |
gataattctggacatagacacaatttacattttcttgagtatgggattttttgtcatttgggaatatcatattctggct |
42579471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 42597575 - 42597625
Alignment:
| Q |
17 |
tggacacagacacaatttacattttcttgagtatgggattttttgtcatttg |
68 |
Q |
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| T |
42597575 |
tggacaca-acacaatctacatttgcttgagtatggaattttttgtcatttg |
42597625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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