View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_7 (Length: 552)
Name: NF1590_low_7
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 1702581 - 1702885
Alignment:
| Q |
1 |
ttctcatcatcctcttattattcaacaccttagccatcctattattccttcaccttctcctcaaaattcaaactcatcacttatccctacacttcttatc |
100 |
Q |
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| T |
1702581 |
ttctcatcatcctcttattattcaacaccttaaccatcctattattcctccaccttctcctcaaaattcaaactcatcacttatccctacacctcttatc |
1702680 |
T |
|
| Q |
101 |
tccctcactacacgtactccaactttatctcctcaaatttctcaagttcccactaactcttccacgagatcacttactggaactgcatcatcaacaccac |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1702681 |
tcccccactacacgtactccaactttatctcctcaaatttctcaagttcccactaactcttccacgagatcacttactggaactgcatcatcaacaccgc |
1702780 |
T |
|
| Q |
201 |
acccgtcaccgaaatcttctcgcatagttacaaggtccgtgaaccaaatacacaagcctaatccaaaatatctccttactacaaaacatccattagcctc |
300 |
Q |
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| T |
1702781 |
acccgtctccggaatcttctcgcatagttacaaggtccgtgaaccaaatacacaagcctaatccaaaatatctccttactacaaagcatccaatagcctc |
1702880 |
T |
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| Q |
301 |
ctcaa |
305 |
Q |
| |
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||||| |
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| T |
1702881 |
ctcaa |
1702885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 300 - 534
Target Start/End: Original strand, 1702911 - 1703145
Alignment:
| Q |
300 |
cctcaaatccagtgaatggcgcaatgcaatgagtgaagaatttgatgctttaatccaacaaggcacatgggagttggtacctcaacctcaagctacaaat |
399 |
Q |
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| T |
1702911 |
cctcaaatctagtgaatggcgcaatgcaatgagtgcagaatttgatgctttaatccaacaaggcacatgggagttggtacctcaacctcaagctacaaat |
1703010 |
T |
|
| Q |
400 |
cttatagggtgcaaatgggtttacagaatcaaaagaaactccaatggtgatattgacaggtacaaggctagactcgtggccaaaggctttcatcaaagac |
499 |
Q |
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| T |
1703011 |
cttatagggtgcaaatgggtttacagaatcaaaagaaaacccaatggtgatattgacaggtacaaggctagactcgtggccaaaggctttcatcaaagac |
1703110 |
T |
|
| Q |
500 |
cggagctagattacacacaaacatttagccctgtt |
534 |
Q |
| |
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| | |||||||||||||||||||| ||||||||| |
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| T |
1703111 |
caggactagattacacacaaacattcagccctgtt |
1703145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 339 - 534
Target Start/End: Complemental strand, 20625192 - 20624997
Alignment:
| Q |
339 |
atttgatgctttaatccaacaaggcacatgggagttggtacctcaacctcaagctacaaatcttatagggtgcaaatgggtttacagaatcaaaagaaac |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20625192 |
atttgatgctttaatccaacaaggcacatgggagttggtacctcaacctcaagctacaaatcttatagggtgcaaatgggtttacagaatcaaaagaaaa |
20625093 |
T |
|
| Q |
439 |
tccaatggtgatattgacaggtacaaggctagactcgtggccaaaggctttcatcaaagaccggagctagattacacacaaacatttagccctgtt |
534 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
20625092 |
cccaatggtgatattgacaggtacaaggctagactcgtggccaaaggctttcatcaaagaccaggactagattacacacaaacattcagccctgtt |
20624997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 530
Target Start/End: Original strand, 3542684 - 3542870
Alignment:
| Q |
344 |
atgctttaatccaacaaggcacatgggagttggtacctcaacc-tcaagctacaaatcttatagggtgcaaatgggtttacagaatcaaaagaaactcca |
442 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||| ||| || | || |||||| || ||||||||||||||||| || ||||||| || | | |
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| T |
3542684 |
atgctttaatccaacaacaaacatgggatttggtacctcgaccatctaa-taaaaatctcattgggtgcaaatgggtttatcgagtcaaaaggaaagcaa |
3542782 |
T |
|
| Q |
443 |
atggtgatattgacaggtacaaggctagactcgtggccaaaggctttcatcaaagaccggagctagattacacacaaacatttagccc |
530 |
Q |
| |
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||||||||||||| || ||||| || ||| | ||||| |||||||| || ||| |||| | || || |||||||||||||| ||||| |
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| T |
3542783 |
atggtgatattgagagatacaaagccagattagtggcgaaaggcttccaccaacgacctggacttgactacacacaaacattcagccc |
3542870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 530
Target Start/End: Complemental strand, 34697028 - 34696894
Alignment:
| Q |
396 |
aaatcttatagggtgcaaatgggtttacagaatcaaaagaaactccaatggtgatattgacaggtacaaggctagactcgtggccaaaggctttcatcaa |
495 |
Q |
| |
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|||||| || ||||||||||||||||| || ||||||| || | |||||||||||||| || ||||| || ||| | ||||| |||||||| || ||| |
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| T |
34697028 |
aaatctcattgggtgcaaatgggtttatcgagtcaaaaggaaagcaaatggtgatattgagagatacaaagccagattagtggcgaaaggcttccaccaa |
34696929 |
T |
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| Q |
496 |
agaccggagctagattacacacaaacatttagccc |
530 |
Q |
| |
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|||| | || || |||||||||||||| ||||| |
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| T |
34696928 |
cgacctggacttgactacacacaaacattcagccc |
34696894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 530
Target Start/End: Original strand, 5401698 - 5401884
Alignment:
| Q |
344 |
atgctttaatccaacaaggcacatgggagttggtacctcaacc-tcaagctacaaatcttatagggtgcaaatgggtttacagaatcaaaagaaactcca |
442 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||| ||| || | || |||||| || ||||||||||||||||| || ||||||| || | | |
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| T |
5401698 |
atgctttaatccaacaacaaacatgggatctggtacctcgaccatctaa-taaaaatctcattgggtgcaaatgggtttatcgagtcaaaaggaaagcaa |
5401796 |
T |
|
| Q |
443 |
atggtgatattgacaggtacaaggctagactcgtggccaaaggctttcatcaaagaccggagctagattacacacaaacatttagccc |
530 |
Q |
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||||||||||||| || ||||| || ||| | ||||| |||||||| || ||| |||| | || || |||||||||||||| ||||| |
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| T |
5401797 |
atggtgatattgagagatacaaagccagattagtggcgaaaggcttccaccaacgacctggacttgactacacacaaacattcagccc |
5401884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 500
Target Start/End: Complemental strand, 26591370 - 26591312
Alignment:
| Q |
442 |
aatggtgatattgacaggtacaaggctagactcgtggccaaaggctttcatcaaagacc |
500 |
Q |
| |
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||||||||||||||||| ||||| || ||||| |||||||||||||| || |||||||| |
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| T |
26591370 |
aatggtgatattgacagatacaaagccagactagtggccaaaggcttccaccaaagacc |
26591312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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