View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_low_70 (Length: 290)
Name: NF1590_low_70
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_70 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 32894793 - 32894529
Alignment:
| Q |
15 |
aacatcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactaataatttttaacattagatggcatgacacaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
32894793 |
aacatcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactgataatttttaacattagatggcatgactcaaat |
32894694 |
T |
|
| Q |
115 |
ttatatacttaactcaattcatttcattcatgtaaaaaagaaattagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacact |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32894693 |
ttatatacttaactcaattcattgcattcatgtgataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacact |
32894594 |
T |
|
| Q |
215 |
ttataagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaata |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32894593 |
ttataagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaata |
32894529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 27076926 - 27076662
Alignment:
| Q |
15 |
aacatcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactaataatttttaacattagatggcatgacacaaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
27076926 |
aacatcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactataaatttttaacattagatggcatgactcaaat |
27076827 |
T |
|
| Q |
115 |
ttatatacttaactcaattcatttcattcatgtaaaaaagaaattagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacact |
214 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27076826 |
ttatatacttaactaaattcattgcattcatgtaataaagaacttagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacact |
27076727 |
T |
|
| Q |
215 |
ttataagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaata |
279 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27076726 |
ttataacagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaata |
27076662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 26052023 - 26051759
Alignment:
| Q |
15 |
aacatcaaattaaaagtcagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactaataatttttaacattagatggcatgacacaaat |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
26052023 |
aacatcaaattaaaagttagaagcatactaatgtttcatacttgcagttcagcgtatcagcatactataaatttttaacattagatggcatgactcaaat |
26051924 |
T |
|
| Q |
115 |
ttatatacttaactcaattcatttcattcatgtaaaaaagaaattagtaagtgctcatacaatataacaattaagtaactttaatcaatcagttcacact |
214 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26051923 |
ttatatacttaacttaattcattgcattcatgtaataaagaacttagtaagtactcatacaatataaaaattaagtaactttaatcaatcagttcacact |
26051824 |
T |
|
| Q |
215 |
ttataagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaata |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26051823 |
ttataagagagtttgcaaagattgtctcagtgaagaattatttatatctaactaacaagagaata |
26051759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University