View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_72 (Length: 285)
Name: NF1590_low_72
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 16401738 - 16401991
Alignment:
| Q |
16 |
tgttttgcaattttcaatatgaattcagtcaaaacaacacaagaagtgtcgttcgtgaaaagagcacttgataaagccgaaattaaacagattctacaaa |
115 |
Q |
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| T |
16401738 |
tgttttgcaattttcaatatgaattcagtcaaaacaacacaagaagtgtcgttcgtgaaaagagcacttgataaagctgaaatcaagcagattctacaaa |
16401837 |
T |
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| Q |
116 |
gtaaatcctttgctcctttacttttccaagaaagtaactttcctatgtatttgaacatatctgctctttcaagataaacactaacaaccattgtgccgaa |
215 |
Q |
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| T |
16401838 |
gtaaatcctttgctcctttacttttccaagaaagtaattttcctatgtatttgaacatgtctgctctttcaagataaacactaacaaccattgtgccgaa |
16401937 |
T |
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| Q |
216 |
aagaagaccgagaattggaagatcgattgcagcgtaagcttcttccggagtaat |
269 |
Q |
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| T |
16401938 |
aagaagaccgagaattggaagatcgattgcagcgtacgcttcttccggagtaat |
16401991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 14305208 - 14304959
Alignment:
| Q |
15 |
ctgttttgcaattttcaatatgaattcagtcaaaacaacacaagaagtgtcgttcgtgaaaagagcacttgataaagccgaaattaaacagattctacaa |
114 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||| |||||||||||||| ||||| ||||| ||||||||| |
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| T |
14305208 |
ctgttttgcaattttcaatacgaattcggtcaaaacaacacaagaagtgtcatttgtgaaaaatgcacttgataaagctgaaatcaaacaaattctacaa |
14305109 |
T |
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| Q |
115 |
agtaaatcctttgctcctttacttttccaagaaagtaactttcctatgtatttgaacatatctgctctttcaagataaacactaacaaccattgtgccga |
214 |
Q |
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| T |
14305108 |
agtaaatcctttggccctttacttttccaagaaagtaactttcctatgtatttaaacatgtctgctctttcaagatatacactaacaaccattgtgccga |
14305009 |
T |
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| Q |
215 |
aaagaagaccgagaattggaagatcgattgcagcgtaagcttcttccgga |
264 |
Q |
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| T |
14305008 |
atagaagaccaagaatcggaagatcgattgcggcgtaagcttcgtccgga |
14304959 |
T |
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