View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_77 (Length: 278)
Name: NF1590_low_77
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 5779147 - 5778897
Alignment:
| Q |
18 |
tgtttttgggtgaatgttaatcaaaagtcaattcaaatgaaattagtttgttgaaaatgattgtattgaaatttagctcatttaatctttaaggaacttg |
117 |
Q |
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| T |
5779147 |
tgtttttgggtgaatgttaatcaaaagtcaattcaaatgaaattagtttgttgaaaatgattgtattgaaatttagctcatttaatctttaaggaacttg |
5779048 |
T |
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| Q |
118 |
atttggtaagtttgatatgattaaaagtaaatgcttgaattacctatattctaattccttcaataatcaaattgtttttcatcaatctcacatgcaacat |
217 |
Q |
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| T |
5779047 |
atttggtaagtttgatatgattaaaagtaaatgcttgaattacctatattctaattccttcaataatcaaattgtttttcatcaatctcacatgcaacat |
5778948 |
T |
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| Q |
218 |
tatttttgcagggtgaaccaagttttcatctatttggatttataatctgtg |
268 |
Q |
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| T |
5778947 |
tatttctgcagggtgaaccaagttttcatctatttggatttataatctgtg |
5778897 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 24752181 - 24752217
Alignment:
| Q |
227 |
agggtgaaccaagttttcatctatttggatttataat |
263 |
Q |
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| T |
24752181 |
agggagaaccaagttttcatctatttggatttataat |
24752217 |
T |
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