View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_low_78 (Length: 276)
Name: NF1590_low_78
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_78 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 15094697 - 15094890
Alignment:
| Q |
30 |
tgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccagctgtaattctgttgtgacag |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
15094697 |
tgttacaaaataaagaggaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccaactgtaattctgtt-tgacag |
15094795 |
T |
|
| Q |
130 |
ttagagtagatagtgttactgtgcagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattca |
225 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15094796 |
ttagagta-atagtgctactgtgtagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattca |
15094890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 15094894 - 15094983
Alignment:
| Q |
180 |
ccttcattagcttataaataagtgcttacacattgtaacccattcactcaattcaataat----ctttctcctttttccattctcttcat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
15094894 |
ccttcattagcttataaataagtgcttacacattgtaacccattcattccattcaataataaaactttctccattttctattctcttcat |
15094983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 18291705 - 18291879
Alignment:
| Q |
1 |
tgttagcatgtagccttcctattgatgtatgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaacttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
18291705 |
tgttagcatgtagccttcctattgatgtatgttacaaaataaagaagatgaag---ttacttgtgatgcaagtaacttgagcaaaccctaacaaactgta |
18291801 |
T |
|
| Q |
101 |
ctatgccagctgtaattctgttgtgacagttagagtagatagtgttactgtgcagttagcttatgatagatataatgt |
178 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18291802 |
ctaggccagctgtatttctgttgtgacagttagagtagatagtgttactgtgtagttagcttatgatagatataatgt |
18291879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 18293805 - 18293901
Alignment:
| Q |
172 |
ataatgtaccttcattagcttataaataagtgcttacacattgtaacccattcactcaattc---aataatctttctcctttttccattctcttcat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
18293805 |
ataatgtaccttcattagcttataaataagtgcttacacattgtaactcattcatacaattcaataataatctttctcccttttccattctcttcat |
18293901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 13892359 - 13892566
Alignment:
| Q |
30 |
tgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccagctgtaattctgttgtgacag |
129 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||||| ||||| ||||||| |||||| |
|
|
| T |
13892359 |
tgttacaaaataaagaggaagaagaacttacttgtgatacaagtaacttgagcaaaccctaacaaacttcaatatgccaactgtatttctgttatgacag |
13892458 |
T |
|
| Q |
130 |
ttagagtagatagtgttactgtgcagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattcactca |
229 |
Q |
| |
|
||||| || | |||||||| || |||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| ||||| || |
|
|
| T |
13892459 |
ttagatgag-ttgtgttactatgtagttagtgtatgatagatataatgtactctcattagcttataaataggtgcttgcacattgtaacagattcattc- |
13892556 |
T |
|
| Q |
230 |
attcaataat |
239 |
Q |
| |
|
|||||||||| |
|
|
| T |
13892557 |
attcaataat |
13892566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 13887702 - 13887890
Alignment:
| Q |
30 |
tgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactttactatgccagctgtaattctgttgtga-ca |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||| || |
|
|
| T |
13887702 |
tgttacaaaataaagaggaagaagaagttacttgtgatacaagtaacttgagcaaaccctaacaaacttcaacatgccagctgtatttctgttatgacca |
13887801 |
T |
|
| Q |
129 |
gttagagtagatagtgttactgtgcagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaac |
218 |
Q |
| |
|
||||||| || | |||||||| | |||||| |||||| |||||||||||| ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
13887802 |
gttagaggag-ttgtgttactatttagttagtgtatgatggatataatgtactctcattagcttataaataggtgcttgtacattgtaac |
13887890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 27816210 - 27816410
Alignment:
| Q |
30 |
tgttacaaaataaagaagaagaagaagttacttgcgatgcaagtaacttgagcaaaccctaacaaactt-tactatgccagctgtaattctgttgtgaca |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
27816210 |
tgttacaaaataaagaggaagaagaagttacttgtgatgcaagtaactcaagcaaaccctaacaaacttcaaacatgccagctgt-tttctgttgtgaca |
27816308 |
T |
|
| Q |
129 |
gttagagtagatagtgttactgtgcagttagcttatgatagatataatgtaccttcattagcttataaataagtgcttacacattgtaacccattcactc |
228 |
Q |
| |
|
||||||| || | ||| |||| || |||||| |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |
|
|
| T |
27816309 |
gttagaggag-ttgtgatactatgtagttagtatatgattgatataatgtactctcattagcttataaatagatgcttacacattgtaactaattcattc |
27816407 |
T |
|
| Q |
229 |
aat |
231 |
Q |
| |
|
||| |
|
|
| T |
27816408 |
aat |
27816410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University