View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_81 (Length: 270)
Name: NF1590_low_81
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 18291704 - 18291450
Alignment:
| Q |
1 |
ttacaaaaaattgacatttaaaagtcatgtctctattaaggtatgtagtgttagaacaatgtatcaacccaattaattcaaaattagtagatgtactcat |
100 |
Q |
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| T |
18291704 |
ttacaaaaaattgacatttaaaagtcatgtctctattaaggtatgtagtgttagaacaatgtatcaacccaattaattcaaaatcagtagatgtactcat |
18291605 |
T |
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| Q |
101 |
aaacccaacaccatataaacatataagcaacagaatattagacacaataaaacaataaaatgaatctacccaataaggtcggtgattaaaactatgctct |
200 |
Q |
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| T |
18291604 |
aaacccaacaccatataaacatataaacaacagaatattagacacaataaaacaataaaatgaatctacccaataaggtcggtgattaaaactatgctct |
18291505 |
T |
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| Q |
201 |
atctcaaaaggaaatggcagtgagtatataattcaagaggaaatggtacacaatg |
255 |
Q |
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| T |
18291504 |
atctcaaaaggaaatggcagtgagtatataattcaagaggaaatggcacacaatg |
18291450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 49678777 - 49678717
Alignment:
| Q |
61 |
gtatcaacccaattaattcaaaattagtagatgtactcataaacccaacaccatataaaca |
121 |
Q |
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| T |
49678777 |
gtatcaacccaattaattcaaaattagtagatgtacccataaacccaacaccatataaaca |
49678717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 49663023 - 49662959
Alignment:
| Q |
58 |
aatgtatcaacccaattaattcaaaattagtagatgtactcataaac-ccaacaccatataaaca |
121 |
Q |
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| T |
49663023 |
aatgtatcagcccaattcattcgaaatcagtagatgtacccataaactctaacaccctataaaca |
49662959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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