View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_low_83 (Length: 270)
Name: NF1590_low_83
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_83 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 43830638 - 43830841
Alignment:
| Q |
9 |
agcacagaatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctcca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43830638 |
agcacagaatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctcca |
43830737 |
T |
|
| Q |
109 |
gctgacaatgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43830738 |
gctgacaatgtccctaatcctctgttaaaccccttgctcagagttgcccctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
43830837 |
T |
|
| Q |
209 |
atcc |
212 |
Q |
| |
|
|||| |
|
|
| T |
43830838 |
atcc |
43830841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 43816422 - 43816614
Alignment:
| Q |
16 |
aatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctccagctgaca |
115 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
43816422 |
aatccaacaatgaatgtactgattataactataacttcttcccattctcctgccaatgctgataactctcccattccaacagcaagtcctccagctgaga |
43816521 |
T |
|
| Q |
116 |
atgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
43816522 |
atgtccctaatcctctgttaaaccccttgctcagagttgcccctgccaaattccattgcatttttatcataaaataaattgaaaacgttgaag |
43816614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 43823385 - 43823569
Alignment:
| Q |
16 |
aatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctccagctgaca |
115 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
43823385 |
aatccaacaatgaatgtactgataatcactataacttcttcccattctccagccaatgctgataactctcccattcctacagcaagtcctccggctgaca |
43823484 |
T |
|
| Q |
116 |
atgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagc |
201 |
Q |
| |
|
||||||||||||||||||||||||| || ||| |||||| ||||||||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
43823485 |
atgtccctaatcctctgttaaaccctctgttcagagttgctcctgcaaaatttcattgcattttgatca-gaaataaattgaaagc |
43823569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 43831567 - 43831609
Alignment:
| Q |
213 |
ttcatcaaaatggtttcaaatcaaaaccaatagttgtaatttc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43831567 |
ttcatcaaaatggtttcaaatcaaaaccaatagttctaatttc |
43831609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 34804032 - 34804231
Alignment:
| Q |
9 |
agcacagaatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctcca |
108 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34804032 |
agcacagaatccaacaatgaatgtactactaataactataatttcttcccattcttcagccaatgctgataactctcccattccaacagcaagtcctcca |
34804131 |
T |
|
| Q |
109 |
gctgacaatgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34804132 |
gctgagaatgtccctaatcctctgttaaaccccttgctcagagttgcccctgtcaaattccattgcatttttatcatataataaattgaaagcattgaag |
34804231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 4999223 - 4999422
Alignment:
| Q |
9 |
agcacagaatccaacaatgaatgtagtgataataactataatttcttcccattctccagccaatgctgataactctcccactccaacagcaagtcctcca |
108 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4999223 |
agcacagaatccaacaatgaatgtactactaataactataatttcttcccattctccagccaatgctgataactctcccattccaacagcaagtcttcca |
4999322 |
T |
|
| Q |
109 |
gctgacaatgtccctaatcctctgttaaaccccttgctcaaagttgcacctgcaaaattccattgcatttttatcataaaataaattgaaagcattgaag |
208 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4999323 |
gctgagaatgtccctaatactctgttaaaccccttgctcagagttgcccctgtcaaattccattgcatttttatcatataataaattgaaagcattgaag |
4999422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 31807294 - 31807256
Alignment:
| Q |
96 |
agcaagtcctccagctgacaatgtccctaatcctctgtt |
134 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
31807294 |
agcaagtcctccagctgataaagtccctaatcctctgtt |
31807256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University