View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_87 (Length: 254)
Name: NF1590_low_87
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 23026189 - 23026309
Alignment:
| Q |
15 |
caaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctc |
114 |
Q |
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| T |
23026189 |
caaagggtttaatgtaacaggatcagtatgtgatatactatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcaaggaaagctc |
23026288 |
T |
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| Q |
115 |
aatattctagtacgatccatt |
135 |
Q |
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| T |
23026289 |
aatattctagtacgatccatt |
23026309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 23034997 - 23035117
Alignment:
| Q |
15 |
caaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
23034997 |
caaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaaaagattaatggaaactgtttcttctatctttcatggaaagctc |
23035096 |
T |
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| Q |
115 |
aatattctagtacgatccatt |
135 |
Q |
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| T |
23035097 |
aatattctagtacgatccatt |
23035117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 23026375 - 23026428
Alignment:
| Q |
201 |
gacaaaatataatgtaattaatgttaccttttaggtaaacaatgctgcaaaacc |
254 |
Q |
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| T |
23026375 |
gacaaaatataatgtatataatgttaccttttaggtaaacaatgctgcaaaacc |
23026428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 23035197 - 23035232
Alignment:
| Q |
219 |
taatgttaccttttaggtaaacaatgctgcaaaacc |
254 |
Q |
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| T |
23035197 |
taatgttaccttttaggtaaacaatgctgcaaaacc |
23035232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 23091379 - 23091462
Alignment:
| Q |
43 |
tgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctcaatattctagta |
126 |
Q |
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|||||| ||||||||| ||||||||| | ||| | |||||||||||| |||| | |||||| ||||| ||||||||||||||| |
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| T |
23091379 |
tgtgatttattatttcgtgaacaacgtgaaaaattgatggaaactgttgcttcaacctttcaaggaaaactcaatattctagta |
23091462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 23056655 - 23056710
Alignment:
| Q |
76 |
ctaatggaaactgtttcttctatctttcatggaaagctcaatattctagtacgatc |
131 |
Q |
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| T |
23056655 |
ctaatggaaaatgttgcttcaatctttcaaggaaaactcaatattctagtaagatc |
23056710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 23063829 - 23063912
Alignment:
| Q |
43 |
tgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctcaatattctagta |
126 |
Q |
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|||||| ||||||||||||| ||||| | || | |||||||| ||| |||| |||||| ||||||| ||||||||||||||| |
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| T |
23063829 |
tgtgatttattatttcatgaccaacgtcaaaagttgatggaaaccgttgcttcgatctttgatggaaaactcaatattctagta |
23063912 |
T |
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