View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_89 (Length: 252)
Name: NF1590_low_89
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_89 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 15096702 - 15096943
Alignment:
| Q |
14 |
catagggacagtatacatcatactagttgtctgaatcaaaatcccagtagcagcaacagccaatgtaggattctccaaataaccagccaaaacagtaaca |
113 |
Q |
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| T |
15096702 |
catagggacagtatacatcatactagttgtctgaatcaaaatcccagtagcagcaacagccaatgtaggattctccaaataaccagccaaaacagtaaca |
15096801 |
T |
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| Q |
114 |
atctcataccaccaccattccaaacatatcataagacaactaggtacagccaatttcatcaactcccccaaaccttcactcacaaccatcatccctccgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
15096802 |
atctcataccaccaccattccaaacatatcataagacaactaggtacagccaatttcatcaactcccccaaaccttcactaaccaccatcatccctccgc |
15096901 |
T |
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| Q |
214 |
caccgccg---cagccgggccactttaacatcatctccttct |
252 |
Q |
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| T |
15096902 |
caccgccgccacaacccggccattttaacatcatctccttct |
15096943 |
T |
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