View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_low_9 (Length: 538)
Name: NF1590_low_9
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_9 |
 | |
|
| [»] scaffold0442 (2 HSPs) |
| | |
|
| [»] scaffold0320 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 7054783 - 7054380
Alignment:
| Q |
18 |
attgttgtcattctatttgtattatatttttcaaagnnnnnnnnctctgaaaaaacaagagacgacaaagatggaagaggaattccacatgcatgtcgcc |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
7054783 |
attgttgtcattctattagtattatatttttcaaagaaaaaaaactctgaaaaaacaagagacgacgaagatggaagaggaattcaacatgcatgccgcc |
7054684 |
T |
|
| Q |
118 |
accgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7054683 |
accgaagaatgtaataaagcatgccacacttgacactccgccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctg |
7054584 |
T |
|
| Q |
218 |
cacacaacctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagt |
317 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7054583 |
cacacaacccatcacatccatcagtaagccaacatgaaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagt |
7054484 |
T |
|
| Q |
318 |
gtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7054483 |
gtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaa |
7054384 |
T |
|
| Q |
418 |
tcaa |
421 |
Q |
| |
|
|||| |
|
|
| T |
7054383 |
tcaa |
7054380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 14462607 - 14462442
Alignment:
| Q |
18 |
attgttgtcattctatttgtattatatttttcaaagnnnnnnnn-ctctgaaaaaacaagagacgacaaagatggaagaggaattccacatgcatgtcgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
14462607 |
attgttgtcattctatttgtattatatttttcaaagaaaaaaaaactctgaaaaaaaaagagacgacgaagatggaagaggaattccacatgcatgccgc |
14462508 |
T |
|
| Q |
117 |
caccgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatga |
182 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14462507 |
caccgaagaatgtaatcaagcatgccacacctgacactccgccgccagggtaccttacacctatga |
14462442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 419 - 529
Target Start/End: Complemental strand, 7054338 - 7054228
Alignment:
| Q |
419 |
caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7054338 |
caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc |
7054239 |
T |
|
| Q |
519 |
tcaagtattat |
529 |
Q |
| |
|
||||||||||| |
|
|
| T |
7054238 |
tcaagtattat |
7054228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 425 - 529
Target Start/End: Complemental strand, 1702473 - 1702367
Alignment:
| Q |
425 |
agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga--atatacatgctcaa |
522 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||||||||||| |||| |||||||||| |||||||| || |||||| |||||||||||||| |
|
|
| T |
1702473 |
agatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccacgtagtaggatgaaaaggccaagtagagcggggatgattatatacatgctcaa |
1702374 |
T |
|
| Q |
523 |
gtattat |
529 |
Q |
| |
|
||||||| |
|
|
| T |
1702373 |
gtattat |
1702367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 425 - 529
Target Start/End: Complemental strand, 9991125 - 9991019
Alignment:
| Q |
425 |
agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga--atatacatgctcaa |
522 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||||||||||| |||| |||||||||| |||||||| || |||||| |||||||||||||| |
|
|
| T |
9991125 |
agatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagccacgtagttggatgaaaaggccaagtagagcggggatgattatatacatgctcaa |
9991026 |
T |
|
| Q |
523 |
gtattat |
529 |
Q |
| |
|
||||||| |
|
|
| T |
9991025 |
gtattat |
9991019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 425 - 529
Target Start/End: Complemental strand, 16613476 - 16613370
Alignment:
| Q |
425 |
agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatga--atatacatgctcaa |
522 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||||||||||| |||| |||||||||||||||||||| || |||||| |||||||| ||||| |
|
|
| T |
16613476 |
agatcaaagtaccaagagaaggtgcaagcaatatggaaacaaagccacgtagtaggatgaaaagaccaagtagtgcggggatgattatatacattctcaa |
16613377 |
T |
|
| Q |
523 |
gtattat |
529 |
Q |
| |
|
||||||| |
|
|
| T |
16613376 |
gtattat |
16613370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Complemental strand, 12624 - 12223
Alignment:
| Q |
20 |
tgttgtcattctatttgtattatatttttcaaagnnnnnnnnctctgaaaaaacaagagacgacaaagatggaagaggaattccacatgcatgtcgccac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
12624 |
tgttgtcattctatttgtattatatttttcaaagaaaaaaaactctgaaaaaacaagagacgacgaagatggaagaggaattccacatgcatgccgccac |
12525 |
T |
|
| Q |
120 |
cgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12524 |
cgaagaatgtaataaagcatgccacacttgacactcagccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctgca |
12425 |
T |
|
| Q |
220 |
cacaacctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagtgt |
319 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12424 |
cacaacccagtacatccatcagtaagccaacatgtaaagagattcattccatccttttaatttaatatatatctctttcttttgtggacattgagagtgt |
12325 |
T |
|
| Q |
320 |
ggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12324 |
ggtgtcaattgagatgatgaacacatcttacactctgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttcaatc |
12225 |
T |
|
| Q |
420 |
aa |
421 |
Q |
| |
|
|| |
|
|
| T |
12224 |
aa |
12223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 419 - 529
Target Start/End: Complemental strand, 12181 - 12071
Alignment:
| Q |
419 |
caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12181 |
caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagttggatgaaaagaccaagtagtacgaggatgaatatacatgc |
12082 |
T |
|
| Q |
519 |
tcaagtattat |
529 |
Q |
| |
|
||||||||||| |
|
|
| T |
12081 |
tcaagtattat |
12071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 38980697 - 38981097
Alignment:
| Q |
18 |
attgttgtcattctatttgtattatatttttcaaagnnnnnnnnctctgaaaaaacaagagacgacaaagatggaagaggaattccacatgcatgtcgcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
38980697 |
attgttgtcattctatttgtattatatttttcaaagaaaaaaaactctgaaaaaacaagagacggcgaagatggaagaggaattccacatgcatgccgcc |
38980796 |
T |
|
| Q |
118 |
accgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
38980797 |
accgaagaatgtaataaagcatgccacacttgacactccgccgccagggtaccttacacctatgacgagtctacgctataaaatgtcgaaaggaaaactg |
38980896 |
T |
|
| Q |
218 |
cacacaacctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagt |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38980897 |
cacacaacccagtacatccatcagtaagccaacgtggaaagagattcattccatccttttaatttaatatatttctctttcttttgttgacattgagagt |
38980996 |
T |
|
| Q |
318 |
gtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38980997 |
gtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaa |
38981096 |
T |
|
| Q |
418 |
t |
418 |
Q |
| |
|
| |
|
|
| T |
38981097 |
t |
38981097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 419 - 529
Target Start/End: Original strand, 38981138 - 38981248
Alignment:
| Q |
419 |
caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38981138 |
caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccgcatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc |
38981237 |
T |
|
| Q |
519 |
tcaagtattat |
529 |
Q |
| |
|
||||||||||| |
|
|
| T |
38981238 |
tcaagtattat |
38981248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 289 - 421
Target Start/End: Complemental strand, 24867391 - 24867259
Alignment:
| Q |
289 |
tttctctttcttttgtggacattgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattc |
388 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
24867391 |
tttctctttcatttatgtacattgagagtgtggtgtcaattgagacgatgaacacgtcttacattttgatggtgaactttatatttaactatttttattt |
24867292 |
T |
|
| Q |
389 |
atgtattgaagaatgctaggttttttgaatcaa |
421 |
Q |
| |
|
||||||||||||| | ||||| | ||||||||| |
|
|
| T |
24867291 |
atgtattgaagaacgataggtctcttgaatcaa |
24867259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 24867207 - 24867137
Alignment:
| Q |
428 |
tcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagt |
498 |
Q |
| |
|
|||||| || || ||| |||||||| ||||| |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
24867207 |
tcaaagaacaaaaagaaggtgcaaacaatatgagaacaaagccaaatagtgggatgaaaaggccaagtagt |
24867137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 13355 - 13756
Alignment:
| Q |
18 |
attgttgtcattctatttgtattatatttttcaaagnnnnnnnnctctgaaaaaacaagagacgacaaagatggaagaggaattccacatgcatgtcgcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
13355 |
attgttgtcattctatttgtattatatttttcaaagaaaaaaa-ctctgaaaaaacaagagacgacgaagatggaagaggaattccacatgcatgccgcc |
13453 |
T |
|
| Q |
118 |
accgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctg |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13454 |
accgaagaacgtaataaagcatgccacacttgacactccgccaccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctg |
13553 |
T |
|
| Q |
218 |
cacacaacctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagt |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13554 |
cacacaacccagtacatccatcagtaagccaacatggaaagagattcatt-catccttttaatttaatatatttctctttcttttgtggacattgagagt |
13652 |
T |
|
| Q |
318 |
gtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13653 |
gtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactttatatttaacaattttgattcatgtattgaagaatgctaggttttttgaa |
13752 |
T |
|
| Q |
418 |
tcaa |
421 |
Q |
| |
|
|||| |
|
|
| T |
13753 |
tcaa |
13756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 419 - 529
Target Start/End: Original strand, 13798 - 13908
Alignment:
| Q |
419 |
caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc |
518 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
13798 |
caagaaagatcaaagtaccaagtgatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagacctagtagtacgagaatgaatatacatgc |
13897 |
T |
|
| Q |
519 |
tcaagtattat |
529 |
Q |
| |
|
||||||||| |
|
|
| T |
13898 |
ggaagtattat |
13908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 8212130 - 8212533
Alignment:
| Q |
18 |
attgttgtcattctatttgtattatatttttcaaagnnnnnnnnctctgaaaaaacaagagacgacaaagatggaagaggaattccacatgcatgtcgcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
8212130 |
attgttgtcattctatttgtattatatttttcagagaaaaaaaattatgaaaaaacaagagacgacgaagatggaagaggaattccacatgcatgccgcc |
8212229 |
T |
|
| Q |
118 |
accgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8212230 |
accgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacatcgaaaggaaagctg |
8212329 |
T |
|
| Q |
218 |
cacacaacctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagt |
317 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8212330 |
cacacaacccaatacatccatcagtaagccaacatggaaagagattcattccatcctttaaatttaatatatttctctttcttttatggacattgagagt |
8212429 |
T |
|
| Q |
318 |
gtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8212430 |
gtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaataatgctaggttttttgaa |
8212529 |
T |
|
| Q |
418 |
tcaa |
421 |
Q |
| |
|
|||| |
|
|
| T |
8212530 |
tcaa |
8212533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 9290391 - 9290794
Alignment:
| Q |
18 |
attgttgtcattctatttgtattatatttttcaaagnnnnnnnnctctgaaaaaacaagagacgacaaagatggaagaggaattccacatgcatgtcgcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
9290391 |
attgttgtcattctatttgtattatatttttcaaagaaaaaaaactctgaaaaaacaagagacgacgaagatggaagaggaataccacatgcatgccgcc |
9290490 |
T |
|
| Q |
118 |
accgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagctg |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
9290491 |
accgaagaatgtaataaggcatgccacacttgacactccaccgccagggtaccttacaccattgacgagtctacactataaaacgttgaaaggaaagctg |
9290590 |
T |
|
| Q |
218 |
cacacaacctagtacatccatcagtaagccaacaatgaaagagattcattccatccttttaatttaatatatttctctttcttttgtggacattgagagt |
317 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9290591 |
cacacaacccagtacatccattagtaagccaacatggaaagagattcattccatccttttaaattaatatatttctctttcttttgtggacattgagagt |
9290690 |
T |
|
| Q |
318 |
gtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9290691 |
gtggtgtcaattgagatgatgaacacatattacactttgatggtgaactctatatttagcaattttgattcatgtattgaagaatgctaggttttttgaa |
9290790 |
T |
|
| Q |
418 |
tcaa |
421 |
Q |
| |
|
|||| |
|
|
| T |
9290791 |
tcaa |
9290794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 421 - 529
Target Start/End: Original strand, 9290838 - 9290946
Alignment:
| Q |
421 |
agaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgctc |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
9290838 |
agaaagatcaaagtaccaagagatggtgcaagcaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtactaggatgaatatacatgctc |
9290937 |
T |
|
| Q |
521 |
aagtattat |
529 |
Q |
| |
|
||||||||| |
|
|
| T |
9290938 |
aagtattat |
9290946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 419 - 529
Target Start/End: Original strand, 8212575 - 8212684
Alignment:
| Q |
419 |
caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc |
518 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
8212575 |
caagaaatatcaaagtaccaagagatggtgcaaaaaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggataaatat-catgc |
8212673 |
T |
|
| Q |
519 |
tcaagtattat |
529 |
Q |
| |
|
| ||||||||| |
|
|
| T |
8212674 |
ttaagtattat |
8212684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 51424582 - 51424986
Alignment:
| Q |
18 |
attgttgtcattctatttgtattatatttttcaaagnnnnnnnn-ctctgaaaaaacaagagacgacaaagatggaagaggaattccacatgcatgtcgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
51424582 |
attgttgtcattctatttgtattatatttttcaaagaaaaaaaaactctgaaaaaacaagagacgacgaagatggaagaggaattccacatgcatgccgc |
51424681 |
T |
|
| Q |
117 |
caccgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagct |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51424682 |
aaccgaagaatgtaataaagcatgtcacacttgacactccaccgccagggtaccttacacctatgacgagtctacgctataaaacgtcgaaaggaaagct |
51424781 |
T |
|
| Q |
217 |
gcacacaacctagtacatccatcagtaagccaacaatg-aaagagattcattccatcc-ttttaatttaatatatttctctttcttttgtggacattgag |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
51424782 |
gcacacaacccagtacatccatcagtaagccaacatggaaaagagattcattccatcctttttaattta--atatttctatttcttttgtggacattgag |
51424879 |
T |
|
| Q |
315 |
agtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggtttttt |
414 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
51424880 |
agtgtggtgtcaattgagacgatgaacgcatcttacactttgatggtgaactctatatttaacaagtttgattcatgaattgaagaatgctaggtttttt |
51424979 |
T |
|
| Q |
415 |
gaatcaa |
421 |
Q |
| |
|
||||||| |
|
|
| T |
51424980 |
gaatcaa |
51424986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 11686552 - 11686712
Alignment:
| Q |
19 |
ttgttgtcattctatttgtattatatttttcaaagnnnnnnnn-ctctgaaaaaacaagagacgacaaagatggaagaggaattccacatgcatgtcgcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
11686552 |
ttgttgtcattctatttgtattatatttttcaaagaaaaaaaaactctgaaaaaacaagagacgacgaagatggaagaggaactccacatgcatgccgcc |
11686651 |
T |
|
| Q |
118 |
accgaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacct |
178 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11686652 |
accaaagaatgtaataaagcatgccacacttgacactccaccgccagggtaccttacacct |
11686712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 419 - 529
Target Start/End: Original strand, 51425028 - 51425138
Alignment:
| Q |
419 |
caagaaagatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
51425028 |
caagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtacaaggatgaatatacattc |
51425127 |
T |
|
| Q |
519 |
tcaagtattat |
529 |
Q |
| |
|
||||||||||| |
|
|
| T |
51425128 |
tcaagtattat |
51425138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 309 - 417
Target Start/End: Original strand, 24999465 - 24999573
Alignment:
| Q |
309 |
attgagagtgtggtgtcaattgagatgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctagg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
24999465 |
attgagagtgtggtgtcaattgagatgatgaacacatcttacactttgacgatgaactctatatttaacaattttgatttctgtattgaagagtgctagg |
24999564 |
T |
|
| Q |
409 |
ttttttgaa |
417 |
Q |
| |
|
||| ||||| |
|
|
| T |
24999565 |
tttcttgaa |
24999573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 24999629 - 24999678
Alignment:
| Q |
425 |
agatcaaagtaccaagagatggtgcaaataatatagaaacaaagccacat |
474 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||| |||||||||| |
|
|
| T |
24999629 |
agatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat |
24999678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University