View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_91 (Length: 250)

Name: NF1590_low_91
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_91
NF1590_low_91
[»] chr3 (10 HSPs)
chr3 (8-241)||(3701510-3701743)
chr3 (9-214)||(3712834-3713042)
chr3 (7-202)||(3705292-3705494)
chr3 (5-153)||(3707854-3708005)
chr3 (7-166)||(3719403-3719563)
chr3 (7-80)||(26807448-26807521)
chr3 (7-80)||(32775271-32775344)
chr3 (7-80)||(32814957-32815030)
chr3 (8-80)||(32772692-32772764)
chr3 (19-72)||(41845773-41845826)
[»] chr7 (2 HSPs)
chr7 (5-80)||(25796173-25796248)
chr7 (19-72)||(45343081-45343134)
[»] chr4 (4 HSPs)
chr4 (5-80)||(19185992-19186067)
chr4 (9-80)||(26741372-26741443)
chr4 (9-80)||(30161835-30161906)
chr4 (9-80)||(51386264-51386335)
[»] chr8 (8 HSPs)
chr8 (8-86)||(12483098-12483176)
chr8 (7-80)||(12289395-12289468)
chr8 (8-85)||(12670511-12670588)
chr8 (9-80)||(939435-939506)
chr8 (9-80)||(2105865-2105936)
chr8 (8-86)||(12482778-12482856)
chr8 (8-80)||(11949429-11949501)
chr8 (5-46)||(11949182-11949223)
[»] chr1 (5 HSPs)
chr1 (9-86)||(27981044-27981121)
chr1 (7-80)||(43849046-43849119)
chr1 (8-80)||(30953117-30953189)
chr1 (19-72)||(39755137-39755190)
chr1 (19-72)||(39760491-39760544)
[»] chr5 (4 HSPs)
chr5 (8-80)||(31965398-31965470)
chr5 (9-80)||(8219735-8219806)
chr5 (9-80)||(38322602-38322673)
chr5 (9-80)||(38327774-38327845)
[»] chr6 (1 HSPs)
chr6 (9-80)||(21882908-21882979)
[»] chr2 (4 HSPs)
chr2 (9-80)||(4767493-4767564)
chr2 (9-80)||(38551329-38551400)
chr2 (19-72)||(14428572-14428625)
chr2 (19-72)||(34962092-34962145)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 3701743 - 3701510
Alignment:
Q  8 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttgctctattcaaaatgttgttag 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  3701743 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgttctattcaaaatgttgttag 3701644  T
Q  108 atatttaacatctagatactacaatgataatatgacaaaggaaacttctcaaatcttaactgtccaaatttcttcatatcaaaattggaggaatgcactg 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  3701643 atatttaacatctagatactataatgataatatgacaaaggaaacttctcaaatcttaactgtccaaatttcttaatatcaaaattggaggaatgcgctg 3701544  T
Q  208 atttgaatgnnnnnnngtcccaaatgattttctt 241  Q
    |||||||||       ||||||||||||||||||    
T  3701543 atttgaatgtttttttgtcccaaatgattttctt 3701510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 3713042 - 3712834
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttgctctattcaa---aatgttgtt 105  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  || |    |||||| ||    
T  3713042 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgttcatttgatgataatgttatt 3712943  T
Q  106 agatatttaacatctagatactacaatgataatatgacaaaggaaacttctcaaatcttaactgtccaaatttcttcatatcaaaattggaggaatgcac 205  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||    
T  3712942 agatatttaacatctatagactacaatgataatatgacaaaggaaacttctcaaatcttaattatccaaatttcttgatatcaaaattggaggtatgcac 3712843  T
Q  206 tgatttgaa 214  Q
    ||| |||||    
T  3712842 tgaattgaa 3712834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 3705494 - 3705292
Alignment:
Q  7 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttgctctat---tcaaaatgttg 103  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||  || ||   | | ||||||     
T  3705494 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttattcaattgatgataatgtta 3705395  T
Q  104 ttagatatttaacatctagatactacaa----tgataatatgacaaaggaaacttctcaaatcttaactgtccaaatttcttcatatcaaaattggagga 199  Q
    ||| |||||||  ||||| | |||||||    ||||||||||||| ||||||||||| ||||||||| |||||||||||||| || ||||||||||||||    
T  3705394 ttacatatttattatctacagactacaatgattgataatatgacagaggaaacttctaaaatcttaattgtccaaatttcttgatgtcaaaattggagga 3705295  T
Q  200 atg 202  Q
    |||    
T  3705294 atg 3705292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 3708005 - 3707854
Alignment:
Q  5 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct---atgttgctctattcaaaatgt 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    ||||| |||||| | |||||    
T  3708005 atattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgttgttctattgataatgt 3707906  T
Q  102 tgttagatatttaacatctagatactacaatgataatatgacaaaggaaact 153  Q
    | ||| || ||||||||||||| ||| ||||||||||||||||||| |||||    
T  3707905 tattacatctttaacatctagacactgcaatgataatatgacaaagaaaact 3707854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 3719563 - 3719403
Alignment:
Q  7 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttgctc-tattcaaaatgttgtt 105  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||  | | || | ||| || ||    
T  3719563 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgtacattttgacaatattatt 3719464  T
Q  106 agatatttaacatctagatactacaatgataatatgacaaaggaaacttctcaaatcttaa 166  Q
    |||| |||||||||||||  ||||||||||| ||||||| || |||||||| |||||||||    
T  3719463 agatctttaacatctagagcctacaatgatagtatgacacagaaaacttctaaaatcttaa 3719403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 26807448 - 26807521
Alignment:
Q  7 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807448 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 26807521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 32775344 - 32775271
Alignment:
Q  7 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32775344 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 32775271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 32815030 - 32814957
Alignment:
Q  7 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815030 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 32814957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 32772764 - 32772692
Alignment:
Q  8 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||| || |||||| |||||    
T  32772764 ttgcagcagccaggaatcaaacccaagtctgtaccgtggcagggtactattctaccattaaaccacttgtgct 32772692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 41845773 - 41845826
Alignment:
Q  19 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 72  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  41845773 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 41845826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 25796248 - 25796173
Alignment:
Q  5 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25796248 atattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 25796173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 45343081 - 45343134
Alignment:
Q  19 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 72  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  45343081 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 45343134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 19186067 - 19185992
Alignment:
Q  5 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186067 atattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 19185992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 26741372 - 26741443
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26741372 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 26741443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 30161906 - 30161835
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161906 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30161835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 51386264 - 51386335
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386264 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 51386335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 12483098 - 12483176
Alignment:
Q  8 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttg 86  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12483098 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 12483176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 12289468 - 12289395
Alignment:
Q  7 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12289468 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 12289395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 12670511 - 12670588
Alignment:
Q  8 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgtt 85  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12670511 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgtt 12670588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 939435 - 939506
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  939435 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 939506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 2105936 - 2105865
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2105936 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 2105865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 12482778 - 12482856
Alignment:
Q  8 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttg 86  Q
    ||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  12482778 ttgcaccagccaggaattgaacccgggtctgtaccatggcagggtactattctaccactagaccactggtgctttgttg 12482856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 11949429 - 11949501
Alignment:
Q  8 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  11949429 ttgcaccagccaggaattgaacccgggtctgtagcgtggcagggtactattctaccactagaccactggtgct 11949501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 11949182 - 11949223
Alignment:
Q  5 atattgcaccagccgggaatcgaacccaggtctgtaccgtgg 46  Q
    |||||||||||||||||||| |||||| |||||| |||||||    
T  11949182 atattgcaccagccgggaattgaacccgggtctgaaccgtgg 11949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 27981121 - 27981044
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttg 86  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27981121 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 27981044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 43849046 - 43849119
Alignment:
Q  7 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849046 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 43849119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 30953117 - 30953189
Alignment:
Q  8 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953117 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30953189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 39755190 - 39755137
Alignment:
Q  19 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 72  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39755190 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39755137  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 39760544 - 39760491
Alignment:
Q  19 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 72  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39760544 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39760491  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 31965398 - 31965470
Alignment:
Q  8 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965398 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 31965470  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 8219806 - 8219735
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8219806 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 8219735  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 38322673 - 38322602
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322673 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 38322602  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 38327845 - 38327774
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327845 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 38327774  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 21882979 - 21882908
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882979 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 21882908  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 4767493 - 4767564
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767493 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 4767564  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 38551400 - 38551329
Alignment:
Q  9 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 80  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551400 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 38551329  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 14428625 - 14428572
Alignment:
Q  19 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 72  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  14428625 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 14428572  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 34962145 - 34962092
Alignment:
Q  19 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 72  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  34962145 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 34962092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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