View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_92 (Length: 250)
Name: NF1590_low_92
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 41696591 - 41696386
Alignment:
| Q |
13 |
aatatgggtcacatgaattttattcaatagaaaagattgaattaaaaaataaatgttagatactagcatttttcatttagttttgagaagtgagcattat |
112 |
Q |
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| T |
41696591 |
aatatgggtcacatgaattttattcaatagaagagattgaattaaaaaataaatgttagatactagcatttttcatttagttttgagaagtgagcattaa |
41696492 |
T |
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| Q |
113 |
agtaaataacaaagggtattgctataaaacatccatgaaggtgtgatttaacacaaaacatctacatgataaagacaaaaatcatttctctttaatatgt |
212 |
Q |
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| T |
41696491 |
agtaaataacaaagcatattgctataaaacatccatgaatgtgtgatttagcacaaaacacctatatgataaagacaaaaatcatttctctttaatatgt |
41696392 |
T |
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| Q |
213 |
atttat |
218 |
Q |
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|||||| |
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| T |
41696391 |
atttat |
41696386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 41696293 - 41696360
Alignment:
| Q |
126 |
gggtattgctataaaacatccatgaaggtgtgatttaacacaaaacatctacatgataaagacaaaaa |
193 |
Q |
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| T |
41696293 |
gggtattgctataaaacattcatgaaggtgtgatttagcactcaacacctacgtgataaagacaaaaa |
41696360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 38875290 - 38875223
Alignment:
| Q |
151 |
aggtgtgatttaacacaaaacatctacatgataaagacaaaaa--tcatttctctttaatatgtattt |
216 |
Q |
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| T |
38875290 |
aggtgtgatttagcacacatcacctacatgataaagacaaaaaagtcatttctctttaatatgtattt |
38875223 |
T |
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