View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_94 (Length: 250)
Name: NF1590_low_94
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_94 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 34694500 - 34694266
Alignment:
| Q |
15 |
gatagaggctgcaatagacatagttgagagtatacttggtgacgttttatgtggacctgaagaacgtgaatagacatgccaccagcagtggaaagcttct |
114 |
Q |
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| T |
34694500 |
gatagaggctgcaatagacatagttgagagtatacttggtgacgttttctgtggacctgaagaacgtgaatagacatgccaccagcagtggaaagcttct |
34694401 |
T |
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| Q |
115 |
tatgacaaacatgacagttaaagtgcttggctttctgatgctgaaccaagattttctcgtcatcgaattcatgatcgcagtaataacaccagacctttga |
214 |
Q |
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| T |
34694400 |
tatgacaaacatgacagttaaagtgcttggctttctgatgctgaaccaagatcttctcgtcatcgaattcatgatcgc-gtaataacaccagacctttga |
34694302 |
T |
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| Q |
215 |
agcatcgcgcttcttcttcctccccatcgaaattcc |
250 |
Q |
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| T |
34694301 |
agcatcgcgcttcttcttcctccccatcgaaattcc |
34694266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 26992242 - 26992008
Alignment:
| Q |
15 |
gatagaggctgcaatagacatagttgagagtatacttggtgacgttttatgtggacctgaagaacgtgaatagacatgccaccagcagtggaaagcttct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992242 |
gatagaggctgcaatagacatagttgagagtatacttggtgacgttttctgtggacctgaagaacgtgaatagacatgccaccagcagtggaaagcttct |
26992143 |
T |
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| Q |
115 |
tatgacaaacatgacagttaaagtgcttggctttctgatgctgaaccaagattttctcgtcatcgaattcatgatcgcagtaataacaccagacctttga |
214 |
Q |
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| T |
26992142 |
tatgacaaacatgacagttaaagtgcttggctttctgatgctgaaccaagatcttctcgtcatcgaattcatgatcgc-gtaataacaccagacctttga |
26992044 |
T |
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| Q |
215 |
agcatcgcgcttcttcttcctccccatcgaaattcc |
250 |
Q |
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| T |
26992043 |
agcatcgcgcttcttcttcctccccatcgaaattcc |
26992008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 27033034 - 27033006
Alignment:
| Q |
15 |
gatagaggctgcaatagacatagttgaga |
43 |
Q |
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| T |
27033034 |
gatagaggctgcaatagacatagttgaga |
27033006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 44865947 - 44866158
Alignment:
| Q |
40 |
gagagtatacttggtgacgttttat--gtggacctgaagaacgtgaatagacatgccaccagcagtggaaagcttcttatgacaaacatgacagttaaag |
137 |
Q |
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|||| |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
44865947 |
gagaatatacttggtgacgttttctttgtggacctgaagaacgtgaatggacatgccaccagcagtggaaagcttcttatgacaaacgtgacacttaaag |
44866046 |
T |
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| Q |
138 |
tgcttggctttctgatgctgaaccaagattttctcgtcatcgaattcatgatcgcagtaataacaccagacctttgaagcatcgcgcttcttcttcctcc |
237 |
Q |
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| T |
44866047 |
tgcttggctttctgatgctgaaccaagatcttctcgtcatcgaattcacgatcgcagtaataacaccatacctttgaagcaacgcgcttcttcttcctcc |
44866146 |
T |
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| Q |
238 |
ccatcgaaattc |
249 |
Q |
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| T |
44866147 |
ccatcgaaattc |
44866158 |
T |
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