View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_97 (Length: 249)

Name: NF1590_low_97
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_97
NF1590_low_97
[»] chr7 (5 HSPs)
chr7 (1-242)||(41170337-41170578)
chr7 (152-215)||(18793691-18793754)
chr7 (152-215)||(38566666-38566729)
chr7 (157-215)||(28249007-28249065)
chr7 (154-218)||(42766594-42766658)
[»] chr2 (4 HSPs)
chr2 (151-214)||(12677789-12677852)
chr2 (157-212)||(5712549-5712604)
chr2 (157-218)||(32700658-32700719)
chr2 (168-217)||(36758172-36758221)
[»] chr5 (6 HSPs)
chr5 (155-215)||(4385959-4386019)
chr5 (152-215)||(15577878-15577942)
chr5 (151-217)||(36439961-36440027)
chr5 (152-218)||(42108563-42108629)
chr5 (152-215)||(817841-817903)
chr5 (157-213)||(22859673-22859729)
[»] chr4 (2 HSPs)
chr4 (151-215)||(32526429-32526493)
chr4 (152-218)||(11432451-11432517)
[»] chr1 (5 HSPs)
chr1 (154-217)||(6213098-6213161)
chr1 (154-216)||(9230794-9230857)
chr1 (155-214)||(42323459-42323518)
chr1 (154-212)||(35879675-35879733)
chr1 (157-218)||(22863292-22863353)
[»] chr6 (1 HSPs)
chr6 (160-217)||(33614576-33614633)
[»] chr3 (2 HSPs)
chr3 (152-215)||(31133027-31133090)
chr3 (151-216)||(33458621-33458686)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41170337 - 41170578
Alignment:
Q  1 aaagcataaactgacttaccacttaccacactgatcgagaagtcgatgttaggtctgatgtgtaccaaataaactagttttgtattagggtctccaaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41170337 aaagcataaactgacttaccacttaccacactgatcgagaagtcgatgttaggtctgatgtgtaccaaataaactagttttgtattagggtctccaaagt 41170436  T
Q  101 tatcggcaagaaaactagaaatgaaatatgatgtaatatataatcaaaatatcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  41170437 tatcggcaagaaaactagaaatgaaatatgatgtaatatataatcaaaatatcaaattctctaaaaattcatgttaaatatcaaaaaagagtttaatctc 41170536  T
Q  201 gttgatctattagttcgcatattcccacacctagtataatct 242  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  41170537 gttgatctattagttcgcatattcccacacctagtttaatct 41170578  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 18793754 - 18793691
Alignment:
Q  152 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 215  Q
    ||||||||||||||||||||||||| ||||||| | ||||||||||| | ||||||||||||||    
T  18793754 tcaaattctctaaaaattcatgttaaatatcaaaagagagtttaatcgcattgatctattagtt 18793691  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 38566729 - 38566666
Alignment:
Q  152 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 215  Q
    |||| ||||| ||||||||||||||  |||||| | ||||||||||||| ||||||||||||||    
T  38566729 tcaagttctccaaaaattcatgttaagtatcaaaagagagtttaatctcattgatctattagtt 38566666  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 28249007 - 28249065
Alignment:
Q  157 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 215  Q
    |||| |||||| |||||||| ||||||| ||||||||||||||  ||||||||||||||    
T  28249007 ttctttaaaaactcatgttaaatatcaaaaaagagtttaatctaattgatctattagtt 28249065  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 42766594 - 42766658
Alignment:
Q  154 aaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 218  Q
    ||||||| ||||||||||||||| |||||||   |||| |||||||| ||||| || ||||||||    
T  42766594 aaattctttaaaaattcatgttaaatatcaaaggagagattaatctcattgatataatagttcgc 42766658  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 12677789 - 12677852
Alignment:
Q  151 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagt 214  Q
    |||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||    
T  12677789 atcaaattctttaaaaattcatgttaaatatcaaaaaaaagtttaatctcgttgatatattagt 12677852  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 5712549 - 5712604
Alignment:
Q  157 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctatta 212  Q
    |||||||||| ||||||||| ||||||| | |||||||||| || |||||||||||    
T  5712549 ttctctaaaacttcatgttaaatatcaaaagagagtttaatatcattgatctatta 5712604  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 32700719 - 32700658
Alignment:
Q  157 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 218  Q
    |||||||||| ||||||||| ||||| | | |||||||||| || ||||| |||||||||||    
T  32700719 ttctctaaaacttcatgttaaatatcgaaagagagtttaatatcattgatttattagttcgc 32700658  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 36758221 - 36758172
Alignment:
Q  168 ttcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 217  Q
    ||||||||| ||||||| | |||||||||| || ||||||||||||||||    
T  36758221 ttcatgttaaatatcaaaagagagtttaatatcattgatctattagttcg 36758172  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 4385959 - 4386019
Alignment:
Q  155 aattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 215  Q
    ||||||||||| | |||||||| |||||||||||||||||||| || ||||||||||||||    
T  4385959 aattctctaaataatcatgttaaatatcaagaaagagtttaatatcattgatctattagtt 4386019  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 15577942 - 15577878
Alignment:
Q  152 tcaaattctctaaaaattcatgttatatatcaagaaa-gagtttaatctcgttgatctattagtt 215  Q
    ||||||||||||||||||||||||| |||| || ||| ||||||||||| |||||  ||||||||    
T  15577942 tcaaattctctaaaaattcatgttaaatataaaaaaaggagtttaatcttgttgagttattagtt 15577878  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 36440027 - 36439961
Alignment:
Q  151 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 217  Q
    ||||||||||||||||| |||||||   |||||| | ||||||||||||  ||||| ||||||||||    
T  36440027 atcaaattctctaaaaagtcatgttgattatcaaaagagagtttaatctatttgatatattagttcg 36439961  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 42108629 - 42108563
Alignment:
Q  152 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 218  Q
    |||||||| |||||||||||||||   |||||| | ||||||||||||  ||||| |||||||||||    
T  42108629 tcaaattccctaaaaattcatgttgattatcaaaagagagtttaatctaattgatatattagttcgc 42108563  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 817841 - 817903
Alignment:
Q  152 tcaaattctctaaaaat-tcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 215  Q
    ||||||||||||||||  |||||||| |||||||||  |||||||||||| |||||| |||||||    
T  817841 tcaaattctctaaaaaaatcatgttaaatatcaaga--gagtttaatctcattgatccattagtt 817903  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 22859673 - 22859729
Alignment:
Q  157 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattag 213  Q
    |||||||||| ||||| ||| ||||||| | |||||||||| || ||||||||||||    
T  22859673 ttctctaaaacttcatattaaatatcaaaagagagtttaatatcattgatctattag 22859729  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 32526493 - 32526429
Alignment:
Q  151 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 215  Q
    |||||||||||||||||||||||||| ||||||| |  |||||||||||  ||||| ||||||||    
T  32526493 atcaaattctctaaaaattcatgttaaatatcaaaagcgagtttaatcttattgatttattagtt 32526429  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 11432451 - 11432517
Alignment:
Q  152 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 218  Q
    ||||||||||||||||||||||||   |||||| | |||||||||| |  ||||| |||||||||||    
T  11432451 tcaaattctctaaaaattcatgttgattatcaaaagagagtttaatttaattgatatattagttcgc 11432517  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 6213098 - 6213161
Alignment:
Q  154 aaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 217  Q
    ||||||||||||||||||||||| |||| || || ||||||| |||  ||||||||||||||||    
T  6213098 aaattctctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcg 6213161  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 9230857 - 9230794
Alignment:
Q  154 aaattctctaaaaattcatgttata-tatcaagaaagagtttaatctcgttgatctattagttc 216  Q
    ||||||||||||||||||||||| | |||||| | || |||||||||| || ||||||||||||    
T  9230857 aaattctctaaaaattcatgttaaattatcaaaagagggtttaatctcattaatctattagttc 9230794  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 42323518 - 42323459
Alignment:
Q  155 aattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagt 214  Q
    ||||||||| ||| |||||||| ||||||| | ||| ||||||||| |||||||||||||    
T  42323518 aattctctataaaatcatgttaaatatcaaaagagaatttaatctcattgatctattagt 42323459  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 35879733 - 35879675
Alignment:
Q  154 aaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctatta 212  Q
    |||||||||||||  |||||||| ||||||| || |||||||||||| ||| |||||||    
T  35879733 aaattctctaaaatgtcatgttaaatatcaaaaaggagtttaatctcattgctctatta 35879675  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 22863353 - 22863292
Alignment:
Q  157 ttctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcgc 218  Q
    |||||||||| |||| |||| ||||| | | |||||||||| || |||||||||||||||||    
T  22863353 ttctctaaaacttcaggttaaatatcgaaagagagtttaatatcattgatctattagttcgc 22863292  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 33614633 - 33614576
Alignment:
Q  160 tctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttcg 217  Q
    ||||||||||||||||| ||||||| | |||||| |||||| ||||| ||||||||||    
T  33614633 tctaaaaattcatgttaaatatcaaaagagagttcaatctcattgatatattagttcg 33614576  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 31133090 - 31133027
Alignment:
Q  152 tcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagtt 215  Q
    |||| |||| ||||||||||||||| |||  || | ||||||||||||| ||||||||||||||    
T  31133090 tcaagttctataaaaattcatgttaaatacaaaaagagagtttaatctcattgatctattagtt 31133027  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 33458621 - 33458686
Alignment:
Q  151 atcaaattctctaaaaattcatgttatatatcaagaaagagtttaatctcgttgatctattagttc 216  Q
    ||||| ||||||| |||||||||||| ||| ||| | | |||||||| |||||||| |||||||||    
T  33458621 atcaagttctctataaattcatgttaaataccaaaagaaagtttaatttcgttgatatattagttc 33458686  T

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