View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_low_99 (Length: 249)
Name: NF1590_low_99
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_99 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 50636491 - 50636562
Alignment:
| Q |
178 |
gatgttaaggctaagtgcatgtttcttatcacgattaaatcattgaaatcacggtaaaccactttgattaat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50636491 |
gatgttaaggctaagtgcatgtttcttatcacgattaaatcattgaaatcacggtaaaccactttgattaat |
50636562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 50636320 - 50636382
Alignment:
| Q |
6 |
actgaaatgaaaattgtgcaaatgataagtgtttatagattgtgatgagcaataaatagcgtag |
69 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50636320 |
actgaaatgaaaattgtgcaaatgata-gtgtttatagattgtgatgagcaataaatagcgtag |
50636382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 50641420 - 50641478
Alignment:
| Q |
6 |
actgaaatgaaaattgtgcaaatgataa-gtgtttatagattgtgatgagcaataaata |
63 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |||||| || | |||||||| |
|
|
| T |
50641420 |
actgaaatgaaaattgtgcaaatgataatgtgcttataaattgtgctgtgaaataaata |
50641478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University