View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1591-INSERTION-3 (Length: 709)
Name: NF1591-INSERTION-3
Description: NF1591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1591-INSERTION-3 |
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Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 650
Target Start/End: Complemental strand, 8035147 - 8034504
Alignment:
| Q |
8 |
acctggcacttctggcaacaaagaaaagtgtccttgttatgccagccagactacccgtggtggcaaacccaagtgcccttaatttgaggaatttggatca |
107 |
Q |
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| T |
8035147 |
acctggcacttctggcaacaaagaaaagtgtccttgttatgccagccagactacccgtggtggcaaacccaagtgcccttaattggaggaatttggatca |
8035048 |
T |
|
| Q |
108 |
taaatactcctatgaaga-aatatccacaccgttaccatgcatgcataacaatattcctcggtctgaattgaaccacatgtaaaataaaatccagttttc |
206 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8035047 |
taaatactcctatgaaattaatatccacaccgttaccatgcatgcataacaatattccttggtctgaattgaaccacatgtaaaataaaatccagttttc |
8034948 |
T |
|
| Q |
207 |
aatacctgttgaattaccgtctgtttaattaaaaataaataatcttatcattgatttgtttgatcgctttgaattctataggaatatttgtactactacc |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8034947 |
aatacctgttgaattaccgtctgtttagttaaaaataaataatcttatcattgatttgtttgatcgctttgaattctataggaatatttgtactactacc |
8034848 |
T |
|
| Q |
307 |
tatcattcgtaatattaatcaaaatttatattagtgtttactattaaaaattttgtaatactttgttattttgacannnnnnnaatttatattagtgttt |
406 |
Q |
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| T |
8034847 |
tatcattcgtaatattaatcaaaatttatattagtgtttactattaaaaaatttgtaatactttgttattttgacatttttttaatttatattagtgttt |
8034748 |
T |
|
| Q |
407 |
aatattagaaaacttactaatactttgttattatgacttttttcaatatgtcaaactaatccatcaaaattgacatccgagaaaatcaaatctaaaacct |
506 |
Q |
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| T |
8034747 |
aatattaaaaaacttactaatacttttttattatgactttttttaataggtcaaactaatccatcaaaattgacatccgagaaaatcaaatctgaaacct |
8034648 |
T |
|
| Q |
507 |
taagatgagttttgctattaagacttaagcatatgagaaaagcccaaatcaaaatactaattcattaggtggaagagcctatcgacttctataatgattg |
606 |
Q |
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| T |
8034647 |
taagatgagttttgccattaagacttaagcatatgagaaaagtccaaatcaaaatactaattcattaggtggaagagcctatcgacttctataatgattg |
8034548 |
T |
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| Q |
607 |
tatagcttcaccgattgatatagactatattagatatagaacac |
650 |
Q |
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| T |
8034547 |
tatagcttcaccgattaatatagacaatattagatatagaacac |
8034504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 8042246 - 8042166
Alignment:
| Q |
8 |
acctggcacttctggcaacaaagaaaagtgtccttgttatgccagccagactacccgtggtggcaaacccaagtgccctta |
88 |
Q |
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| T |
8042246 |
acctggcactgctggcaaccaagaaaagtgtccttgttatgccagccagactacccgtggtggcaaacccaagtgccctta |
8042166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 643 - 709
Target Start/End: Complemental strand, 8032863 - 8032797
Alignment:
| Q |
643 |
tagaacacgtatttatacttctaagccaagaagtataaatacggtcatatgatattgatttggcttt |
709 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8032863 |
tagaacacatatttatacttctaagccaagaagtataaatacggtcatatgatattgatttggcttt |
8032797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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