View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1591-INSERTION-4 (Length: 233)
Name: NF1591-INSERTION-4
Description: NF1591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1591-INSERTION-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 9842657 - 9842432
Alignment:
| Q |
8 |
aaaacaaatataaataaacagttgtgctatatggtgcaacaagcaccacacgaattgcacgagagaatggcttaccccaccatccaatttcctttttata |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9842657 |
aaaacaaatataaataaacagttgtgttatatggtgcaacaagcaccacatgaattgcacgagagaatggctgaccccaccatccaatttcctttttata |
9842558 |
T |
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| Q |
108 |
ttannnnnnngatattaacattaaaatgaataaataaataaatatatggaagagacaatcacggcacacgttttgattttggacaatcactgcacaaact |
207 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9842557 |
ttatttttttgataataacattaaaatgaataaataaataaatatatggaagagacaatcacggcacacgttttgattttggacaatcactgcacaaact |
9842458 |
T |
|
| Q |
208 |
tccttctccataaccttatgttctga |
233 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
9842457 |
tccttctccataaccttatgttctga |
9842432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 23556011 - 23556222
Alignment:
| Q |
23 |
aaacagttgtgctatatggtgcaacaagcaccacacgaattgcacgagagaatggcttaccccaccatccaatttcctttttatattannnnnnng-ata |
121 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
23556011 |
aaacagttgtgctatatggtgcgacaagcaccacacgaattgcacgagagaatggctgaccccaccatccaatttcctttttatattatttttttttata |
23556110 |
T |
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| Q |
122 |
ttaacattaaaatgaataaataaataaatatatggaagagacaatcacggcacacgttttgattttggacaatcactgcacaaacttccttctccataac |
221 |
Q |
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| T |
23556111 |
ttaacattaaaatgaataaataaacaaatatatggaagagacaatcatggcacacgttttgattttagacaatcacggcacaaacttccttctccataac |
23556210 |
T |
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| Q |
222 |
cttatgttctga |
233 |
Q |
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|||||||||||| |
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| T |
23556211 |
cttatgttctga |
23556222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 42434968 - 42434763
Alignment:
| Q |
26 |
cagttgtgctatatggtgcaacaagcaccacacgaattgcacgagagaatggcttaccccaccatccaatttcctttttatattannnnnnngatattaa |
125 |
Q |
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||||||||||||||| ||| ||||||||| ||||||||||||||||||||| || ||| || |||||||||||||||||||||| |||||||| |
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| T |
42434968 |
cagttgtgctatatgatgcgacaagcaccgcacgaattgcacgagagaatgactgaccaaactatccaatttcctttttatattatttttttgatattaa |
42434869 |
T |
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| Q |
126 |
cattaaaatgaataaataaataaatatatggaagagacaatcacggcacacgttttgattttggacaatcactgcacaaacttccttctccataacctta |
225 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
42434868 |
cattaaaatgaataaataaataaatatattgaagagacaatcacggcacacgttttgattttggacaatcactgcacaaacttctttctccataacatta |
42434769 |
T |
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| Q |
226 |
tgttct |
231 |
Q |
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|||||| |
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| T |
42434768 |
tgttct |
42434763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 8017225 - 8017400
Alignment:
| Q |
26 |
cagttgtgctatatggtgcaacaagcaccacacgaattgcacgagagaatggcttaccccaccatccaatttcctttttatattannnnnnngatattaa |
125 |
Q |
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||||||||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
8017225 |
cagttgtgcaatatggtgcgacgagcaccacacgaattgcacgagagaatggcggaccccaccatccaatttcctttttatattatttttttgatattaa |
8017324 |
T |
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| Q |
126 |
cattaaaatgaataaataaataaatatatggaagagacaatcacggcacacgttttgattttggacaatcactgca |
201 |
Q |
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| T |
8017325 |
cattaaaatgaataaataaataagtatatggaagagacaatcacggcacacgttttgattttgaacaatcactgca |
8017400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 41703375 - 41703527
Alignment:
| Q |
24 |
aacagttgtgctatatggtgcaacaagcaccacacgaattgcacgagagaatggcttaccccaccatccaatttcctttttatattannnnnnngatatt |
123 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
41703375 |
aacagttgtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatatt |
41703474 |
T |
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| Q |
124 |
aacattaaaatgaataaataaataaatatatggaagagacaatcacggcacac |
176 |
Q |
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| T |
41703475 |
aacattaaaatgaataaataaacaaatatatggcagagacaatcacggcacac |
41703527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 41697782 - 41697933
Alignment:
| Q |
25 |
acagttgtgctatatggtgcaacaagcaccacacgaattgcacgagagaatggcttaccccaccatccaatttcctttttatattannnnnnngatatta |
124 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
41697782 |
acagttgtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatatta |
41697881 |
T |
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| Q |
125 |
acattaaaatgaataaataaataaatatatggaagagacaatcacggcacac |
176 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
41697882 |
acattaaaatgaataaataaacaaatatatggcagagacaatcacggcacac |
41697933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 41697918 - 41697962
Alignment:
| Q |
189 |
gacaatcactgcacaaacttccttctccataaccttatgttctga |
233 |
Q |
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||||||||| ||||| |||| |||||||||||||||||||||||| |
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| T |
41697918 |
gacaatcacggcacacactttcttctccataaccttatgttctga |
41697962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 41703512 - 41703556
Alignment:
| Q |
189 |
gacaatcactgcacaaacttccttctccataaccttatgttctga |
233 |
Q |
| |
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||||||||| ||||| |||| |||||||||||||||||||||||| |
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| T |
41703512 |
gacaatcacggcacacactttcttctccataaccttatgttctga |
41703556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 54079167 - 54079017
Alignment:
| Q |
26 |
cagttgtgctatatggtgcaacaagcaccacacgaattgcacgagagaatggcttaccccaccatccaatttcctttttatattannnnnnngatattaa |
125 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
54079167 |
cagttgtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaa |
54079068 |
T |
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| Q |
126 |
cattaaaatgaataaataaataaatatatggaagagacaatcacggcacac |
176 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
54079067 |
cattaaaatgaataaataaacaaatatatggcagagacaatcacgacacac |
54079017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 54079032 - 54078988
Alignment:
| Q |
189 |
gacaatcactgcacaaacttccttctccataaccttatgttctga |
233 |
Q |
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||||||||| |||| |||| |||||||||||||||||||||||| |
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| T |
54079032 |
gacaatcacgacacacactttcttctccataaccttatgttctga |
54078988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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