View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1591-INSERTION-7 (Length: 812)
Name: NF1591-INSERTION-7
Description: NF1591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1591-INSERTION-7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 7 - 467
Target Start/End: Complemental strand, 38709468 - 38709008
Alignment:
| Q |
7 |
aaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattcaagaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38709468 |
aaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaatttcgatgcattcaagaact |
38709369 |
T |
|
| Q |
107 |
aaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38709368 |
aaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttccgtttcatcatcaccaatgacctcatatccattttca |
38709269 |
T |
|
| Q |
207 |
ccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgaca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38709268 |
ccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcaccccagtttcagcattaacaatctctccattcttttccacacggtatgaca |
38709169 |
T |
|
| Q |
307 |
agtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcttctc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38709168 |
agtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcttctc |
38709069 |
T |
|
| Q |
407 |
aagccaccttctaattggtctagcaccatacacctacacaataatataacatagttagtat |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38709068 |
aagccaccttctaattggtctagcaccatacacctacacaataatataacatagttagtat |
38709008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 154 - 465
Target Start/End: Complemental strand, 10047358 - 10047050
Alignment:
| Q |
154 |
ataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgactt |
253 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
10047358 |
ataaagcttactcttccatttcatcatcgccaatgacctcatatccattttcaccgacaatttttggtccatttggtatctgaatcaaaatatctgactt |
10047259 |
T |
|
| Q |
254 |
catcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctca |
353 |
Q |
| |
|
|| ||||||||||||||| |||||| ||||||||||||| ||| ||||| ||| |||||||||||||||||| |||||||| | |||||||| |||||| |
|
|
| T |
10047258 |
caccccagtttcagcatttacaatccctccattcttttcgacacggtataccaaatcacttcccttaggaccagcatcaatgcaaacagttgtattctca |
10047159 |
T |
|
| Q |
354 |
tcaattttttcctttatatacatcatagccagctcactcaccacattcttctcaagccaccttctaattggtctagcaccatacacctacacaataatat |
453 |
Q |
| |
|
||||||| |||| ||||| |||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
10047158 |
tcaatttcttcccttataagcatcatagatagctctgtcaccacattcttctcaagccac---caaattggtctagcaccgtacacctacacaacaataa |
10047062 |
T |
|
| Q |
454 |
aacatagttagt |
465 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10047061 |
aacatagttagt |
10047050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 536 - 812
Target Start/End: Complemental strand, 38708939 - 38708677
Alignment:
| Q |
536 |
gtaaaatgttttatttggtacttgcagttgtaggccagaatatgtagaatatttgattttagcccctccaaggttaaaatgaatattatcaggcctaaag |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38708939 |
gtaaaatgttttatttggtacttgcagttgtaggccagaatatgtagaatattcgattttagcctctccagggttaaaatgaatattatcaggcctaaag |
38708840 |
T |
|
| Q |
636 |
caaaatatgatatattttcaaggaccaatttcaaaacgaacaagtttgcaatgactgaaacaaaacacgtaggaactaaagtaaaatatgatgtatttgc |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
38708839 |
caaaatatgatatattttcaaggaccaatttcaaaatgaacaagtttgcaatgaccgaaacaaaacacgt--------------aatatgatgtatttgc |
38708754 |
T |
|
| Q |
736 |
aatgaatnnnnnnnnnnnnnnnnntactttttactgggattaaaagtaaaaatatggtgtattctcgagggcttcaa |
812 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38708753 |
aatgaataaaacaaaaacaaaaaatactttttactgggattaaaagtaaaaatatggtgtattctcgagggcttcaa |
38708677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 10047424 - 10047360
Alignment:
| Q |
44 |
ccaaaagaactaataaaagagatacttgtg-aatatgtttgcaagttcgatgcattcaagaacta |
107 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||||||| |||||| |||||||| |||| |
|
|
| T |
10047424 |
ccaaaacaactgataaaagagatacttgtgcgatatgtttgcaatttcgatacattcaaggacta |
10047360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 228 - 447
Target Start/End: Complemental strand, 45468976 - 45468757
Alignment:
| Q |
228 |
ggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaa |
327 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||| |||||| ||| || ||||||||||||||| |
|
|
| T |
45468976 |
ggtatctgaatcaatatatcagacttcaccccagtttcagcattaacaatccctccattcttttctacacggtatgccaaatcgcttcccttaggaccag |
45468877 |
T |
|
| Q |
328 |
catcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcttctcaagccaccttctaattggtct |
427 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||| ||| |||| |||| ||| || || ||||||| |||||||| ||||| ||||| |||||||| |
|
|
| T |
45468876 |
catctatgtaaaccgttgtattctcatcaatttcttctcttatgagcatcctagagagttctgtcaccaccttcttctctagccatcttctgattggtct |
45468777 |
T |
|
| Q |
428 |
agcaccatacacctacacaa |
447 |
Q |
| |
|
||| ||||||||||| |||| |
|
|
| T |
45468776 |
agctccatacacctatacaa |
45468757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 214 - 444
Target Start/End: Original strand, 739517 - 739747
Alignment:
| Q |
214 |
tttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcact |
313 |
Q |
| |
|
||||||||| | ||| |||||| ||||||||||| ||||||| ||| |||||||||||||||||||| || | ||||| || ||| | ||| |||| |
|
|
| T |
739517 |
tttttggtccatttgttatctgaatcaaaatatccgacttcaccccgatttcagcattaacaatctcttcactattttctgcacggtgtaccaaaccact |
739616 |
T |
|
| Q |
314 |
tcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcttctcaagccac |
413 |
Q |
| |
|
||| |||||| || |||| ||||| || ||||| || |||||||||| |||| ||||| |||| ||| |||||| |||| || ||||||||||||||| |
|
|
| T |
739617 |
tccattaggatcagcatcgatgtaaactgttgtattttcatcaatttcttcccttataagcatcctagacagctctgtcactaccttcttctcaagccac |
739716 |
T |
|
| Q |
414 |
cttctaattggtctagcaccatacacctaca |
444 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
739717 |
cttctaattgatctagcaccatacacctaca |
739747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 447
Target Start/End: Original strand, 741757 - 741882
Alignment:
| Q |
321 |
ggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcttctcaagccaccttctaa |
420 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||| || | || |||| | ||||| |||| | ||||||| || ||||||||||||||||||| |
|
|
| T |
741757 |
ggaccaacatcaatgtaaaccgttgtattctcatcaattactttccttgtata-agcatagacagcactgtcaccacctttttctcaagccaccttctaa |
741855 |
T |
|
| Q |
421 |
ttggtctagcaccatacacctacacaa |
447 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
741856 |
ttggtctagcaccatacacctacacaa |
741882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 42448972 - 42449025
Alignment:
| Q |
391 |
tcaccacattcttctcaagccaccttctaattggtctagcaccatacacctaca |
444 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42448972 |
tcaccacctttttctcaagccagcttctaattggtctagcaccatacacctaca |
42449025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 535818 - 535745
Alignment:
| Q |
26 |
ttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattc |
99 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
535818 |
ttaaaacaaatttgaggaccaaagtgactaataaattagacacttgtgaatatgtttgcaatttcgatacattc |
535745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University