View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15911_high_2 (Length: 635)

Name: NF15911_high_2
Description: NF15911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15911_high_2
NF15911_high_2
[»] chr7 (3 HSPs)
chr7 (482-633)||(36605754-36605905)
chr7 (5-73)||(16261627-16261695)
chr7 (127-187)||(24762199-24762262)
[»] chr4 (2 HSPs)
chr4 (14-187)||(32649896-32650072)
chr4 (518-624)||(32649640-32649746)
[»] chr2 (2 HSPs)
chr2 (14-187)||(2388338-2388513)
chr2 (5-73)||(9209602-9209670)
[»] scaffold0755 (1 HSPs)
scaffold0755 (5-73)||(3057-3125)
[»] chr1 (1 HSPs)
chr1 (5-73)||(32439547-32439615)
[»] chr8 (1 HSPs)
chr8 (16-73)||(12634947-12635004)
[»] chr3 (3 HSPs)
chr3 (127-187)||(52129634-52129697)
chr3 (5-73)||(46232940-46233008)
chr3 (14-61)||(30764214-30764261)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 482 - 633
Target Start/End: Original strand, 36605754 - 36605905
Alignment:
Q  482 catgttaatataggtagttaaaatacatatatattgggaattgaatagagtaaattaatataggcaaatgggggaaaatttgaggaatgaaaactaatag 581  Q
    ||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605754 catgttaatgtaggtagttaaaatacatatatactgtaaattgaatagagtaaattaatataggcaaatgggggaaaatttgaggaatgaaaactaatag 36605853  T
Q  582 attgtagaatcaaaatgatgttccactatttgattgagattcatttctgtcg 633  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||| ||||    
T  36605854 attgtagaatcaaaatgatgttttactatttgattgagattcagttcagtcg 36605905  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 16261695 - 16261627
Alignment:
Q  5 tttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatatt 73  Q
    |||||| | ||||||||||||| ||||||| |||  ||||| ||||||||||||||||||||| |||||    
T  16261695 tttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcaattttttatatt 16261627  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 24762199 - 24762262
Alignment:
Q  127 agttattttcctgcataattatgcagg---ctctttaagggaatagttgtattagtagctatgg 187  Q
    ||||||||| |||||||||| ||||||   ||||||| ||| ||||||||||||||||||||||    
T  24762199 agttatttttctgcataattttgcaggttgctctttagggggatagttgtattagtagctatgg 24762262  T

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Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 32650072 - 32649896
Alignment:
Q  14 tttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatattgagaataagttttaattgcagtgtatccggatagaagcgt 113  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||  ||||||||||| ||||||||  ||||||||     
T  32650072 tttggttttgtgcgattgatgtactccatttcataattttaccattcaatttttcatattcataatattttttaattgcaatgtatccgattagaagcga 32649973  T
Q  114 tggaaagcttacgagttattttcctgcataattatgcag---gctctttaagggaatagttgtattagtagctatgg 187  Q
    |||||| ||||| ||||||||||||| |||||| |||||   ||||||||| || |||||||||||||||| |||||    
T  32649972 tggaaaacttacaagttattttcctggataattttgcaggttgctctttaaagggatagttgtattagtagatatgg 32649896  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 518 - 624
Target Start/End: Complemental strand, 32649746 - 32649640
Alignment:
Q  518 ggaattgaatagagtaaattaatataggcaaatgggggaaaa-tttgaggaatgaaaactaatagattgtagaatcaaaatgatgttccactatttgatt 616  Q
    ||||| ||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||| || |||||||    
T  32649746 ggaatggaagagagttaattaatataggcaaatgtgggaaaaatttgaggaatgaaaactaatagattatagaatgaaaattatgttcc-ctgtttgatt 32649648  T
Q  617 gagattca 624  Q
    || |||||    
T  32649647 gacattca 32649640  T

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Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 2388513 - 2388338
Alignment:
Q  14 tttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatattgagaataagttttaattgcagtgtatccggatagaagcgt 113  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| | |||| | |||| ||| ||||||||||| ||||||| |    
T  2388513 tttgattttgtgcgattgatgtactccgtttcataattttaccattcaatttttcatattcataatatggtttagttg-agtgtatccggttagaagctt 2388415  T
Q  114 tggaaagcttacgagttattttcctgcataattatgcagg---ctctttaagggaatagttgtattagtagctatgg 187  Q
    |||||||||||| |||||||||||||||||||| ||||||   || |||||| | |||||||||||||||| |||||    
T  2388414 tggaaagcttacaagttattttcctgcataattttgcaggtttctttttaagcggatagttgtattagtagttatgg 2388338  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 9209602 - 9209670
Alignment:
Q  5 tttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatatt 73  Q
    |||||| | ||||||||||||| ||||||| |||  ||||| ||||||||||||||||||||| |||||    
T  9209602 tttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcaattttttatatt 9209670  T

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Target: scaffold0755 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 3057 - 3125
Alignment:
Q  5 tttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatatt 73  Q
    |||||| | ||||||||||||| ||||||| |||  ||||| |||||||||||||||||||||||||||    
T  3057 tttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcaatttttcatatt 3125  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 32439615 - 32439547
Alignment:
Q  5 tttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatatt 73  Q
    |||||| | ||||||||||||| ||||||| |||  ||||| ||||||||||||||||||||| |||||    
T  32439615 tttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcaattttttatatt 32439547  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 12635004 - 12634947
Alignment:
Q  16 tgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatatt 73  Q
    ||||| ||||| |||||| ||||| ||||||||||||||||||||||| ||| |||||    
T  12635004 tgattgtgtgctattgatttactctattttataattttaccattcaatatttgatatt 12634947  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 52129634 - 52129697
Alignment:
Q  127 agttattttcctgcataattatgcagg---ctctttaagggaatagttgtattagtagctatgg 187  Q
    ||||||||| |||||||||| ||||||   ||||||| ||| ||||||||||||||||||||||    
T  52129634 agttatttttctgcataattttgcaggttgctctttagggggatagttgtattagtagctatgg 52129697  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 46233008 - 46232940
Alignment:
Q  5 tttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatatt 73  Q
    |||||| | ||||||||||||| ||||||| |||  ||||| ||||||||||||||| ||||| |||||    
T  46233008 tttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcagttttttatatt 46232940  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 30764261 - 30764214
Alignment:
Q  14 tttgattttgtgcgattgatgtactcaattttataattttaccattca 61  Q
    ||||||||||||| ||||||||||| || ||||| |||||||||||||    
T  30764261 tttgattttgtgcaattgatgtactgaaatttattattttaccattca 30764214  T

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