View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15911_high_4 (Length: 470)
Name: NF15911_high_4
Description: NF15911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15911_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 39620538 - 39620665
Alignment:
| Q |
121 |
aacacgtgcatataaaactaaatctagatttatgttaaatctttttatgtcctcacttcggttttcgactttcgtataggcccgaaattttatttcttta |
220 |
Q |
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| T |
39620538 |
aacacgtgcatataaaactaattctagatttatgttaaatctttttatgtcctcacttcggttttcgactttcgtataggcccgaaattttatttcttta |
39620637 |
T |
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| Q |
221 |
attccatttttaatacactatcaagttt |
248 |
Q |
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| T |
39620638 |
attccatttttaatacactatcaagttt |
39620665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 336 - 452
Target Start/End: Original strand, 39620664 - 39620779
Alignment:
| Q |
336 |
ttactacagcaatccatcagaacaatgtttcattggtgtctaagatgtgtagtgtaatctctcaaagattaagtttaagaaagatgattttaattttaat |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
39620664 |
ttactacagcaatccatcagaacaatgtttcattggtgtctaagatgtgtagtgtaatctctcaaagattaagtttaaggaagatga-tttaattttaat |
39620762 |
T |
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| Q |
436 |
caaagatttacaatgat |
452 |
Q |
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| T |
39620763 |
caaagatttacaatgat |
39620779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 39620432 - 39620484
Alignment:
| Q |
15 |
cacagagtccgtgattttttggttggttggtaagtaagtgagtggccctagca |
67 |
Q |
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| T |
39620432 |
cacagagtccgtgattttttggttggttggtaagtaagtgagtggccctagca |
39620484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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