View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15911_low_13 (Length: 303)
Name: NF15911_low_13
Description: NF15911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15911_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 30284751 - 30285025
Alignment:
| Q |
18 |
ctctagttatttgtcattcattcatacgcacgaaaatccaaccattggtgagttataaggcaccccttatccaaaagaatgtccaggttcattaaattca |
117 |
Q |
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| T |
30284751 |
ctctagtaacttgtcattcattcatacgcccaaaaattcaaccattggtgagtgataaggtatcccttttccaaaagcatgtccaggttcattaaattca |
30284850 |
T |
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| Q |
118 |
aacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaattttgttcctttcaacacacgtcaaaatgcatgtcacgcc |
217 |
Q |
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| T |
30284851 |
aacaaaaatccaccaccataagttcagtaccacggtttcttttcatttttgccaactcaattgtgttcatttcaacacacgtcaaaatgcatgtcacgcc |
30284950 |
T |
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| Q |
218 |
atggccaaatgttcgtgcatgtaatcaatcatataaccttcatttcaaattttatggctataaatagtacccttt |
292 |
Q |
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| T |
30284951 |
atggccaaatgttcgtgcatgtaatcaatcatataactttcatttcaaactttatagctataaatagtacccttt |
30285025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 84 - 293
Target Start/End: Original strand, 30313324 - 30313533
Alignment:
| Q |
84 |
ttatccaaaagaatgtccaggttcattaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaattttgt |
183 |
Q |
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| T |
30313324 |
ttatacaaaagaatgtccaggttcatcaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaattttgt |
30313423 |
T |
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| Q |
184 |
tcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgtaatcaatcatataaccttcatttcaaattttatggctataaata |
283 |
Q |
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| T |
30313424 |
tcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgtaatcaatcatataactttcatttcaaattttatagctataaata |
30313523 |
T |
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| Q |
284 |
gtaccctttg |
293 |
Q |
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| T |
30313524 |
gtaccctttg |
30313533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 30289784 - 30289939
Alignment:
| Q |
80 |
ccccttatccaaaagaatgtccaggttcattaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaatt |
179 |
Q |
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| T |
30289784 |
ccccttatacaaaagaatgtctaggttcatcaaattcaaacaaaactccaccaacc-aggttcagaaccatggttccatttcatttttgccaactcaatt |
30289882 |
T |
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| Q |
180 |
ttgttcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgca |
236 |
Q |
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| T |
30289883 |
ttgttcatttcaacacacgtcaaaatgcatgtcacaccatggccaaatgttggtgca |
30289939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 80 - 239
Target Start/End: Original strand, 30297278 - 30297436
Alignment:
| Q |
80 |
ccccttatccaaaagaatgtccaggttcattaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaatt |
179 |
Q |
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| T |
30297278 |
cccctcatccaaaataatgtccaggttcatcaaattcaaacaaaactccaccacca-aagttcagaaccatggttccttttcattttcgccacctcaatt |
30297376 |
T |
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| Q |
180 |
ttgttcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgt |
239 |
Q |
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| T |
30297377 |
ttgttcctttcaacacacgtcaaaatgcatgccacaaaatggccaaatgtttgtgcatgt |
30297436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 30302481 - 30302622
Alignment:
| Q |
80 |
ccccttatccaaaagaatgtccaggttcattaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaatt |
179 |
Q |
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| T |
30302481 |
cccctcatacaaaagaatgtccaggttcatcaaattcaaacaaaactccacc-acccaagttcagtaccatggtt--------------ccacctcaatt |
30302565 |
T |
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| Q |
180 |
ttgttcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgca |
236 |
Q |
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||| || |||||||||||||||||||||||||| | |||| |||||||||| ||||| |
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| T |
30302566 |
ttgatcatttcaacacacgtcaaaatgcatgtctcaccatagccaaatgttggtgca |
30302622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 46807603 - 46807647
Alignment:
| Q |
91 |
aaagaatgtccaggttcattaaattcaaacaaaactccaccaact |
135 |
Q |
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| T |
46807603 |
aaagaatgtccaggttcatcaaattaaaacaaaacttcacaaact |
46807647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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