View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15911_low_17 (Length: 260)
Name: NF15911_low_17
Description: NF15911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15911_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4711965 - 4712208
Alignment:
| Q |
1 |
ctatttaaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaact |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4711965 |
ctatttaaacaataccattcccaattacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaact |
4712064 |
T |
|
| Q |
101 |
tggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712065 |
tggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcaga |
4712164 |
T |
|
| Q |
201 |
tatttatcaatgatattttggctgaacaatacgctgatgtgatt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712165 |
tatttatcaatgatattttggctgaacaatacgctgatgtgatt |
4712208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4845905 - 4846148
Alignment:
| Q |
1 |
ctatttaaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaact |
100 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4845905 |
ctatttaaacaatactattccaaattacactgcaccagaagctgtatacttaactgcaagaagttatggaaagtatgtgacagaggattataatgtaact |
4846004 |
T |
|
| Q |
101 |
tggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcaga |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4846005 |
tggaatttcgaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttaccaagaataaaggtgatagagtttttcaga |
4846104 |
T |
|
| Q |
201 |
tatttatcaatgatattttggctgaacaatacgctgatgtgatt |
244 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
4846105 |
tatttatcaatgatattttggctgaactatatgctgatgtgatt |
4846148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4667143 - 4666917
Alignment:
| Q |
1 |
ctatttaaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaact |
100 |
Q |
| |
|
||||||| | ||||| ||||| || |||||||||||||||| ||| ||||| ||||||||||||||||||||||||| | |||| |||||||||| || |
|
|
| T |
4667143 |
ctatttacaaaatactattccaaattacactgcaccagaagttgtgtacttaactgcaagaagttatggaatggatgccaaagagaattataatgtgaca |
4667044 |
T |
|
| Q |
101 |
tggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcaga |
200 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
4667043 |
tggaattttaaagttgattctatttttacttatatggtaaggttgcatttttgtgagtttgattggcatatcaagaatccaggtgatagagtttttcaga |
4666944 |
T |
|
| Q |
201 |
tatttatcaatgatattttggctgaac |
227 |
Q |
| |
|
| ||||| |||||||| ||||||||| |
|
|
| T |
4666943 |
tttttatagatgatattatggctgaac |
4666917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 4663196 - 4662990
Alignment:
| Q |
1 |
ctatttaaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaact |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4663196 |
ctatttaaacaataccattccaaattacactgcaccagaaactgtatacttaactgcaagaaattatggaaagtatgtgacagaggattataatgtaact |
4663097 |
T |
|
| Q |
101 |
tggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcaga |
200 |
Q |
| |
|
|||||||| | ||||||||| |||||| || ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | ||||||| |
|
|
| T |
4663096 |
tggaattttgaggttgattcttcttttacatacatggtaaggttacatttttgtgagtttgatccgaatatcataaataaaggtgatagaatgtttcaga |
4662997 |
T |
|
| Q |
201 |
tatttat |
207 |
Q |
| |
|
| ||||| |
|
|
| T |
4662996 |
tttttat |
4662990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 4653719 - 4653482
Alignment:
| Q |
7 |
aaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaacttggaat |
106 |
Q |
| |
|
||||||||| ||||| || |||| |||||||||||||||||| | ||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
4653719 |
aaacaatacaattccaaattacatcgcaccagaagctgtatacctaactgcgagaagttatggaatgaatgtcacagaggattacaatgtaacttggaat |
4653620 |
T |
|
| Q |
107 |
ttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatattta |
206 |
Q |
| |
|
||| ||||||| || | |||||||||||||| ||||||||||||||||| |||||| || ||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
4653619 |
ttcgaagttgactcaacatttacttatatggtcaggttacatttttgtgaatttgattggcgtatcaaggataaaggtgatagagttttccagatattta |
4653520 |
T |
|
| Q |
207 |
tcaatgatattttggctgaacaatacgctgatgtgatt |
244 |
Q |
| |
|
| ||||| | |||||||||| | | |||||||||||| |
|
|
| T |
4653519 |
tacatgatttcttggctgaaccaaatgctgatgtgatt |
4653482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 4637056 - 4636859
Alignment:
| Q |
7 |
aaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaacttggaat |
106 |
Q |
| |
|
||||||| |||||| || |||| ||||||||||| ||| ||||| |||||||||||||| |||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
4637056 |
aaacaatgtcattccaaattacattgcaccagaagttgtgtacttaactgcaagaagttacggaatgtatgagacaaaggattataatgtaacttggaac |
4636957 |
T |
|
| Q |
107 |
ttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatt |
204 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
4636956 |
tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaactataaaggtgatagagtctttcagatatt |
4636859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 4697086 - 4697283
Alignment:
| Q |
7 |
aaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaacttggaat |
106 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||||| ||||| |||||||||||| |||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4697086 |
aaacaacaccattcaaaattacactgcaccagaagctgtgtacttaactgcaagaagtcgtggattggatgagacagaggatttcaatgtaacttggaat |
4697185 |
T |
|
| Q |
107 |
ttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatt |
204 |
Q |
| |
|
||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||| || |||||| |||| |||||||||||| ||||| ||||| |
|
|
| T |
4697186 |
ttcgaagttgatgttggttttacttatatggtaaggttgcatttttgtgagtttgatcagcatatcaaaaatataggtgatagagtctttcaaatatt |
4697283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 4631132 - 4630971
Alignment:
| Q |
1 |
ctatttaaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaact |
100 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
4631132 |
ctatttaaacaataccatttcaaattacactgcaccagaagctgtttacttaactgcgagaagttatggaatggatgcaacaaaggattacaatgtaact |
4631033 |
T |
|
| Q |
101 |
tggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttga |
162 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4631032 |
tggaattttgaagttgattcttcttttacttatatggtaagattacatttttgtgagtttga |
4630971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 4783731 - 4783952
Alignment:
| Q |
7 |
aaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaacttggaat |
106 |
Q |
| |
|
||||||| |||||| || |||| ||||||||||| ||| ||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
4783731 |
aaacaatgtcattccaaattacattgcaccagaaggtgtttacttaactgcaagaagttatggaatgtatgagacagaggattacaatgtaacttggaac |
4783830 |
T |
|
| Q |
107 |
ttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatattta |
206 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| | | ||||||||| |||||||||| || | |
|
|
| T |
4783831 |
tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca |
4783930 |
T |
|
| Q |
207 |
tcaatgatattttggctgaaca |
228 |
Q |
| |
|
| |||||| |||||||||||| |
|
|
| T |
4783931 |
tagatgatagtttggctgaaca |
4783952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 4816160 - 4816396
Alignment:
| Q |
7 |
aaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaacttggaat |
106 |
Q |
| |
|
||||||| |||||| || |||| ||||||||||| ||| ||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
4816160 |
aaacaatgtcattccaaattacattgcaccagaaggtgtttacttaactgcaagaagttatggaatgtatgagacagaggattacaatgtaacttggaac |
4816259 |
T |
|
| Q |
107 |
ttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatattta |
206 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| | | ||||||||| |||||||||| || | |
|
|
| T |
4816260 |
tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca |
4816359 |
T |
|
| Q |
207 |
tcaatgatattttggctgaacaatacgctgatgtgat |
243 |
Q |
| |
|
| |||||| ||||||||||| | ||||||||||| |
|
|
| T |
4816360 |
tagatgatagtttggctgaactttttgctgatgtgat |
4816396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 4864121 - 4863927
Alignment:
| Q |
7 |
aaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaacttggaat |
106 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||| ||| ||||| |||||||||||||| ||| | ||| |||||||| || ||||||||||||||| |
|
|
| T |
4864121 |
aaacaacaccattcaaaattacactgcaccagaagttgtgtacttaactgcaagaagttacggacagtatgccacagaggagtacaatgtaacttggaat |
4864022 |
T |
|
| Q |
107 |
ttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagat |
201 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||| |||||||| |
|
|
| T |
4864021 |
tttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgatccgaatataacaaataaaggtgatagagcctttcagat |
4863927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 4643785 - 4643673
Alignment:
| Q |
92 |
aatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag |
191 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||| |
|
|
| T |
4643785 |
aatgtaacttggaattttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgatccggatataacaaataaaggtgatagag |
4643686 |
T |
|
| Q |
192 |
tttttcagatatt |
204 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
4643685 |
tctttcagatatt |
4643673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 4647619 - 4647488
Alignment:
| Q |
111 |
aagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatttatcaa |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||| | ||| |||||| |||||||| ||||||||| || ||||| | |
|
|
| T |
4647619 |
aagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaattcaggtgatacagtttttcatatgtttataga |
4647522 |
T |
|
| Q |
211 |
tgatattttggctgaacaatacgctgatgtgatt |
244 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| |
|
|
| T |
4647521 |
tgatattttggctgaacattatgctgatgtgatt |
4647488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 4672793 - 4672675
Alignment:
| Q |
89 |
tataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgata |
188 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
4672793 |
tataatgtaacttggaattttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttgacaggcttatcattaatacaggtgata |
4672694 |
T |
|
| Q |
189 |
gagtttttcagatatttat |
207 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
4672693 |
gagcctttcagatttttat |
4672675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 4672905 - 4672837
Alignment:
| Q |
4 |
tttaaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaat |
72 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
4672905 |
tttaaacaataccattccaaattacactgcaccagaagctgtttacgtaactgcaagaagttatggaat |
4672837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4643912 - 4643848
Alignment:
| Q |
1 |
ctatttaaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagtt |
65 |
Q |
| |
|
||||||||| ||| ||||||| || |||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
4643912 |
ctatttaaaaaatgccattccaaattacactgcaccagaagctgtttatttaactgcaagaagtt |
4643848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 18925632 - 18925875
Alignment:
| Q |
1 |
ctatttaaacaataccattcccaaatacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaact |
100 |
Q |
| |
|
|||| |||||||||||||||| || ||||| |||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
18925632 |
ctatataaacaataccattccaaactacacggcaccagaagttgtatacttaactgcaagaagttatggaatggatgcgacaaaggattataatgtaact |
18925731 |
T |
|
| Q |
101 |
tggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcaga |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||| || |||||||| ||||||||| || ||| |||||| ||||||||||||||||||||| |
|
|
| T |
18925732 |
tggaattttgaagttgattctgcctttacttatttggtaagattgcatttttgcgagtttgattggcatataaagaatcaaggtgatagagtttttcaga |
18925831 |
T |
|
| Q |
201 |
tatttatcaatgatattttggctgaacaatacgctgatgtgatt |
244 |
Q |
| |
|
| ||||| |||||| ||||||||||| | | |||||||||||| |
|
|
| T |
18925832 |
tttttatagatgataatttggctgaacgaaatgctgatgtgatt |
18925875 |
T |
|
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