View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15911_low_19 (Length: 227)
Name: NF15911_low_19
Description: NF15911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15911_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 33679227 - 33679023
Alignment:
| Q |
1 |
ctgtaggattgataatagattgatagagag--tttagagtttagggttggacctatctttgcatttactactatacttaggtatttataaaagaatgaaa |
98 |
Q |
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| T |
33679227 |
ctgtaggattgattatagattgatagagagagtttagagtttagggttggacctatctttgcatttactactatacttaggtatttataaaagaatgaaa |
33679128 |
T |
|
| Q |
99 |
attctctttccttatttgaatttttaattagtgggatattcaatctagttttaccttggcgatcaagttgaatagtttgaaaggttgga-aaaatattga |
197 |
Q |
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| T |
33679127 |
attctctttccttatttgaatttttaattagtgggatattcaatctagttttaccttggcgatcaagttgaatagtttgaaaggttggaaaaaatattga |
33679028 |
T |
|
| Q |
198 |
aattc |
202 |
Q |
| |
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||||| |
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| T |
33679027 |
aattc |
33679023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 33686688 - 33686472
Alignment:
| Q |
2 |
tgtaggattgataatagattgatagagagtttagagtttagggttggac--ctatctttgcatttactacta---------tac-ttaggtatttataaa |
89 |
Q |
| |
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|||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||||||| |
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| T |
33686688 |
tgtatgattgataataaattgg--gagagtttagagtttagggttggacacctatctttgcatttactactacttatggggtgcgttaggtatttataaa |
33686591 |
T |
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| Q |
90 |
agaatgaaaattctctttccttatttgaatttttaattagtgggatattcaatctagttttaccttggcgatcaag-----ttgaatagtttgaaaggtt |
184 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| || ||||||||| |
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| T |
33686590 |
agaatgaaaattctctttccttttttgaatttttaactagtgggatattcaatctagtattaccttggcgatcaagtgaatttgaatggtatgaaaggtt |
33686491 |
T |
|
| Q |
185 |
gg-aaaaatattgaaattc |
202 |
Q |
| |
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|| |||||||||||||||| |
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| T |
33686490 |
ggaaaaaatattgaaattc |
33686472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 33703742 - 33703526
Alignment:
| Q |
2 |
tgtaggattgataatagattgatagagagtttagagtttagggttggac--ctatctttgcatttactacta---------tac-ttaggtatttataaa |
89 |
Q |
| |
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|||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||||||| |
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| T |
33703742 |
tgtatgattgataataaattgg--gagagtttagagtttagggttggacacctatctttgcatttactactacttatggggtgcgttaggtatttataaa |
33703645 |
T |
|
| Q |
90 |
agaatgaaaattctctttccttatttgaatttttaattagtgggatattcaatctagttttaccttggcgatcaag-----ttgaatagtttgaaaggtt |
184 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| || ||||||||| |
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| T |
33703644 |
agaatgaaaattctctttccttttttgaatttttaactagtgggatattcaatctagtattaccttggcgatcaagtgaatttgaatggtatgaaaggtt |
33703545 |
T |
|
| Q |
185 |
gg-aaaaatattgaaattc |
202 |
Q |
| |
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|| |||||||||||||||| |
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|
| T |
33703544 |
ggaaaaaatattgaaattc |
33703526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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