View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15911_low_4 (Length: 551)
Name: NF15911_low_4
Description: NF15911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15911_low_4 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 43742984 - 43743325
Alignment:
| Q |
19 |
agagaatgatgacgtttctagctcaatacaagtgtataatattttgatggaaagtgtatgaaatgaatagcacttgtgtctttctttatttcaagtgtag |
118 |
Q |
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| T |
43742984 |
agagaatgatgacgtttctagctcaatacaagtgtataatattttgatggaaagtgtatgaaatgaatagcacttgtgtctttctttatttcaagtgtag |
43743083 |
T |
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| Q |
119 |
ctttttctcttgcgcttgtaagtttggtgctatttcacatcggaaagtctaaaacttttccaccatggatcagtttggttttagtcatttgatgaaagaa |
218 |
Q |
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| T |
43743084 |
ctttttctcttgcgcttgtaagtttggtgctatttcatatgggaaagttt--------------atggatcagtttggttttagtcatttgatcaaagga |
43743169 |
T |
|
| Q |
219 |
agaccacagtattatcatgctctttcaccattagannnnnnnncacattttctttcctccatgtctctctcacccaacaggcaaacaccaccaccgattc |
318 |
Q |
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| T |
43743170 |
agaccacagtattatcatgctctttcaccattagattttttttcacattttctttcctccatgtctctctcacccaacaggcaaacaccaccaccgattc |
43743269 |
T |
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| Q |
319 |
tccttcaaccattctacgttgaacgtcttgattttgggaagatgggatatgggtgc |
374 |
Q |
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| T |
43743270 |
tccttcaaccattctacgttgaacattttgattttgggaagatgggatatgggtgc |
43743325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 461 - 534
Target Start/End: Original strand, 43743409 - 43743482
Alignment:
| Q |
461 |
agttgcaagcattataggagatgatacagagtgttccttgttacaattagatttactctttctgtccttgttac |
534 |
Q |
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| T |
43743409 |
agttgcaagcattataggagatgatgcagagtgttccttgttacaattagatttactctttctgtccttgttac |
43743482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 6639838 - 6639873
Alignment:
| Q |
337 |
ttgaacgtcttgattttgggaagatgggatatgggt |
372 |
Q |
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| T |
6639838 |
ttgaacgtcttgattttgggaagatgggatatgggt |
6639873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 11335165 - 11334984
Alignment:
| Q |
144 |
ggtgctatttcacatcggaaagtctaaaacttttccaccatggatcagtttggttttagtcatttgatgaaagaaagaccacagtattatcatgctcttt |
243 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| |
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| T |
11335165 |
ggtgttatttcacatgagaaagtctaaaacttttccaccatggatcagtttggttttagtcatttcatcaaaggaagaccacagtattatcatgctcttt |
11335066 |
T |
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| Q |
244 |
caccattagannnnnnnncacattttctttcctccatgtctctctcacccaacaggcaaacaccaccaccgattctccttcaa |
326 |
Q |
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| T |
11335065 |
caccactaga-tttttttcacattttctttcctccatgtctctctcacccaacaggcaaacaccaccaccgattctccttcaa |
11334984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 461 - 534
Target Start/End: Complemental strand, 11334823 - 11334750
Alignment:
| Q |
461 |
agttgcaagcattataggagatgatacagagtgttccttgttacaattagatttactctttctgtccttgttac |
534 |
Q |
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| T |
11334823 |
agttgcaagcattatagaagatgatgcagagtgttccttgttataattagatttactctttctgtccttgttac |
11334750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 11334967 - 11334910
Alignment:
| Q |
317 |
tctccttcaaccattctacgttgaacgtcttgattttgggaagatgggatatgggtgc |
374 |
Q |
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| T |
11334967 |
tctccttcaaccattctacgttgaacgtcttgattttgggaagatgggatatgggtgc |
11334910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 141 - 326
Target Start/End: Complemental strand, 32079842 - 32079657
Alignment:
| Q |
141 |
tttggtgctatttcacatcggaaagtctaaaacttttccaccatggatcagtttggttttagtcatttgatgaaagaaagaccacagtattatcatgctc |
240 |
Q |
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||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| || |||| || ||||||| |||||||||||| |
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| T |
32079842 |
tttggtggcatttcacatgggaaagtctaaaactttcccaccatggatcagtttggttttaatcatttaatcaaaggaataccacagcattatcatgctc |
32079743 |
T |
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| Q |
241 |
tttcaccattagannnnnnnncacattttctttcctccatgtctctctcacccaacaggcaaacaccaccaccgattctccttcaa |
326 |
Q |
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| T |
32079742 |
tttcatcactatattttttttcacattctctttcctccatgtgtctctcgcccaacaagaaaacaccaccaccaattctccttcaa |
32079657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 461 - 532
Target Start/End: Complemental strand, 32079496 - 32079425
Alignment:
| Q |
461 |
agttgcaagcattataggagatgatacagagtgttccttgttacaattagatttactctttctgtccttgtt |
532 |
Q |
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| T |
32079496 |
agttgcaagcattataggagatgatgcagagtgttccttgttacaattagatttactctttatgtccttgtt |
32079425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 32079640 - 32079583
Alignment:
| Q |
317 |
tctccttcaaccattctacgttgaacgtcttgattttgggaagatgggatatgggtgc |
374 |
Q |
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| T |
32079640 |
tctccttcaaccattctacgttgaacgtcttgattttgggaagatgggatatgggtgc |
32079583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 26269 - 26314
Alignment:
| Q |
150 |
atttcacatcggaaagtctaaaacttttccaccatggatcagtttg |
195 |
Q |
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|||| |||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
26269 |
atttaacatgggaaagtgtaaaacttttccaccatgggtcagtttg |
26314 |
T |
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