View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15911_low_7 (Length: 400)
Name: NF15911_low_7
Description: NF15911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15911_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 33678960 - 33678666
Alignment:
| Q |
17 |
cctctagggactatactcatctcgagtagtaatcactataacttttcaaacacgttgtattcttagtatatgtgaacaataaacgtgaatatttatacat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33678960 |
cctctagggactatactcatctcgagtagtaatcactataacttttcaaacacgttgtattcttagtatatgtgaacaataaacgtgaatatttatacat |
33678861 |
T |
|
| Q |
117 |
gtagttgattttttgaacgacacaaaatatactttgttcttattctcaatatgatttggaaaattaatggaacaagatgaaaacaaaaatgttggtgtct |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33678860 |
gtagttgattttttgaacgacacaaaacatactttgttcttattctcaatatgatttggaaaattaatggaacaagatgaaaacaaaaatgttggtgtct |
33678761 |
T |
|
| Q |
217 |
tcttc--nnnnnnnnttattgttggtgtcttgtccccttcttgaatttcttcataggttcaaagcaatttcgtcttgtctgcgccaagaatgttg |
309 |
Q |
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| T |
33678760 |
tcttcaaaaaaaaaaatattgttggtgtcttgtccccttcttgaatttcttcataggttcaaagtaatttcgtcttgtctgcgccaagaatgttg |
33678666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 33686409 - 33686288
Alignment:
| Q |
17 |
cctctagggactatactcatctcgagtagtaatcactataacttttcaaacacgttgtattcttagtatatgtgaacaataaacgtgaatatttatacat |
116 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33686409 |
cctctagggactatactcatctcgagtagtaataactataacttttcaaacacgttgtattcttagtatatgtgaacaataaacatgaatatttatacat |
33686310 |
T |
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| Q |
117 |
gtagttgattttttgaacgaca |
138 |
Q |
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| T |
33686309 |
gtagttgattttttgaacgaca |
33686288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 33703463 - 33703342
Alignment:
| Q |
17 |
cctctagggactatactcatctcgagtagtaatcactataacttttcaaacacgttgtattcttagtatatgtgaacaataaacgtgaatatttatacat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33703463 |
cctctagggactatactcatctcgagtagtaataactataacttttcaaacacgttgtattcttagtatatgtgaacaataaacatgaatatttatacat |
33703364 |
T |
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| Q |
117 |
gtagttgattttttgaacgaca |
138 |
Q |
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|||||||||||||||||||||| |
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| T |
33703363 |
gtagttgattttttgaacgaca |
33703342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 386
Target Start/End: Complemental strand, 33678624 - 33678589
Alignment:
| Q |
351 |
ctataaattcttgatcttgattagtcaactacatat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33678624 |
ctataaattcttgatcttgattagtcaactacatat |
33678589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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