View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15912_high_3 (Length: 268)
Name: NF15912_high_3
Description: NF15912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15912_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 34456031 - 34455765
Alignment:
| Q |
5 |
ccaagaatatattgtattgaaacacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagta |
104 |
Q |
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| T |
34456031 |
ccaaaaatatattgtattgaaacatagagaccacacttagtttcgtacattcttaaattcacagaaattctaaattaaggtttgtaaaattggtttagta |
34455932 |
T |
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| Q |
105 |
tcaagatttcaa-gtaagttcagacaagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgattgaatac |
203 |
Q |
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| T |
34455931 |
tcaagatttcaaagtaagttcagacaagttagagaaagttgtgttggcatcaaacttaaataacttctcatccaatggttcctcttaatcgattgtataa |
34455832 |
T |
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| Q |
204 |
ttcctatgcttcaaatataacttcgtatatcctttgcg--tatgtctccatctttggttaacgacat |
268 |
Q |
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| T |
34455831 |
ttcgtatgcttcaaatataacttcgtatatcctttacgtatatgtctccatctttggttaacgacat |
34455765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 32268665 - 32268530
Alignment:
| Q |
10 |
aatatattgtattgaaacacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtatcaag |
109 |
Q |
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| T |
32268665 |
aataaattgtatcgatccacaaagaccgcgcttagtttcgatcgttcttaaattcacaggaattctaaattaaggtttgtaaaattggtttggtggcagg |
32268566 |
T |
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| Q |
110 |
atttcaagtaagttcagacaagttagagaaagttgt |
145 |
Q |
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| T |
32268565 |
attgcaattaagttaagacaagttatataaagttgt |
32268530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 29020175 - 29020346
Alignment:
| Q |
27 |
cacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtatcaagatttcaagtaagttcag |
126 |
Q |
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| T |
29020175 |
cacatagaccacgcttagtttcaatcattcttaaattcactgaaattctaaattaaggtttgtaaaattgttttggtagcaggattgcaagcaagttaag |
29020274 |
T |
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| Q |
127 |
acaagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgattg |
198 |
Q |
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| T |
29020275 |
acaagttagagaaagttgtgttgggattagacttagataatttcacatccaatggttcctcttaatcgattg |
29020346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 1467877 - 1467830
Alignment:
| Q |
178 |
atggttcctcttaatcgattgaatacttcctatgcttcaaatataact |
225 |
Q |
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| T |
1467877 |
atggttcctcttaatcgattgtatactttttatgcctcaaatataact |
1467830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 13002197 - 13002265
Alignment:
| Q |
129 |
aagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgatt |
197 |
Q |
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| T |
13002197 |
aagtttgagaaagttgtgttggaattagacttagataacttctcatccaatggttcctcttaatcgatt |
13002265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 13076855 - 13076923
Alignment:
| Q |
129 |
aagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgatt |
197 |
Q |
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| T |
13076855 |
aagtttgagaaagttgtgttggaattagacttagataacttctcatctaatggttcctcttaatcgatt |
13076923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 11222612 - 11222658
Alignment:
| Q |
181 |
gttcctcttaatcgattgaatacttcctatgcttcaaatataacttc |
227 |
Q |
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| T |
11222612 |
gttcctcttaatcgattgtatactatttatgcttcaaatataacttc |
11222658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 8717708 - 8717750
Alignment:
| Q |
185 |
ctcttaatcgattgaatacttcctatgcttcaaatataacttc |
227 |
Q |
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| T |
8717708 |
ctcttaatcgattgtatactttttatgcttcaaatataacttc |
8717750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 24808365 - 24808417
Alignment:
| Q |
27 |
cacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaat |
79 |
Q |
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| T |
24808365 |
cacagagaccacatttagtttagaccattcttaaattcgcagaaattctaaat |
24808417 |
T |
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