View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15912_low_1 (Length: 609)
Name: NF15912_low_1
Description: NF15912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15912_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 423
Target Start/End: Complemental strand, 34851889 - 34851473
Alignment:
| Q |
7 |
gagtagcaaaggcataatactaatgatagtggccatattttaatatctagtttttaattatgaaaacttttcttagccaaaataaattaaattatggttc |
106 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851889 |
gagtaacaaagacataatactaatgatagtggccattttttaatatctagtttttaattatgaaaacttttcttagccaaaataaattaaattatggttc |
34851790 |
T |
|
| Q |
107 |
ctagtcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851789 |
ctagtcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaat |
34851690 |
T |
|
| Q |
207 |
aataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgtgacataatattcttagaatttaatttagttat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851689 |
aataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgtgacataatattcttagaatttaatttagttat |
34851590 |
T |
|
| Q |
307 |
taagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaaggatataataaatttctcaggtacttaaacgagg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
34851589 |
taagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaaggatataataaattcctcaggtaattaaacgagg |
34851490 |
T |
|
| Q |
407 |
gctgaaaaaggatgaga |
423 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
34851489 |
gcttaaaaaggatgaga |
34851473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 439 - 593
Target Start/End: Complemental strand, 34851485 - 34851331
Alignment:
| Q |
439 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctttttcttggggaataattttcttgaccaccatagtagattgaagagctg |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851485 |
aaaaaggatgagaatgatggcactcacaacatggtggggttcagtggtcctgtttcttggggaataattttcttgaccaccatagtagattgaagagctg |
34851386 |
T |
|
| Q |
539 |
tagtagctaggttccattgtctcattctgataattggtacaagtattcttgttat |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34851385 |
tagtagctaggttccattgtctcattctgataattggtacaagtatttttgttat |
34851331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 3511696 - 3511619
Alignment:
| Q |
318 |
caaacatttcattagatctcatcatttacaagatatttgaatat-ttttctaggaaggatataataaatttctcaggt |
394 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| |||| |||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
3511696 |
caaacatttaattagatctcaccatttataagatgtttgtatatgttttctaggaaggatataataaattcctcaggt |
3511619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 3651160 - 3651239
Alignment:
| Q |
114 |
taccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaac |
193 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||| | ||||||||||||||| ||||||||| |||| ||| |||||||||| |
|
|
| T |
3651160 |
taccttgccaccagtcgcctcttgaagcgctgtttgaattgttaccattgagatcaccattattcgtatatttcttgaac |
3651239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 514 - 578
Target Start/End: Original strand, 3652164 - 3652228
Alignment:
| Q |
514 |
accaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtac |
578 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| | ||||||| |||||||||||||||| ||||| |
|
|
| T |
3652164 |
accaccatagtggattgaagagctgaagtaggtgggttccaccgtctcattctgataatcggtac |
3652228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 3512626 - 3512532
Alignment:
| Q |
111 |
tcctaccttcccaccagtcccctcttgaagcactgctggaattgttaccattgtgatcaccatgattcttatctttcttgaactgcaaaagtgaa |
205 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||| | | |||||||| |||| ||||| ||| || | |||||||||| |||| |||| ||||| |
|
|
| T |
3512626 |
tcctacctagccaccagtctccccttgaagcactgttaggattgttacaattgagatcagcattatccgtatctttcttaaactacaaaggtgaa |
3512532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 572
Target Start/End: Complemental strand, 31120837 - 31120764
Alignment:
| Q |
502 |
ataattttcttgaccaccatagtagattgaagagctgtagta---gctaggttccattgtctcattctgataat |
572 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||| || || |||| ||||||||||||||||| |
|
|
| T |
31120837 |
ataattttcttgaccaccataatagattgaggaactgtagtaattactgggctccactgtctcattctgataat |
31120764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University