View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15912_low_2 (Length: 437)
Name: NF15912_low_2
Description: NF15912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15912_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 34455778 - 34455363
Alignment:
| Q |
1 |
ttggttaacgacataaaatccattaaatgaactgacggctatgggatcatctatgtcaggatagacttacatttcctttccttaagagtttgattatttt |
100 |
Q |
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| T |
34455778 |
ttggttaacgacataaaatccattaaatcaactgacggctatgggatcatctatgtcaggatagacttacatttcctttccttaagagtttgattattct |
34455679 |
T |
|
| Q |
101 |
ttggttcagattcatggcaatgttgaaatgtggattcgttgtcttattcttggatcttcctnnnnnnnnnnnnnnnnnnctttcctttccaaatctcgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
34455678 |
ctggttcagattcatggcaatgttgaaatgtggattcattgtcttattcttggttcttcctaaaaaaaaaaaaaaa---ctttcctttccaaatctcgtg |
34455582 |
T |
|
| Q |
201 |
tcctacttggaacttgctatctttagatgattcatcaatttacggcatttcaattagtccatcgttattattgttttcaagtttgtcattattttcttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34455581 |
tcctacttggaacttgctatctttagatgattcatcaatttacggcatttcaattagtccatcgttattattgttttcaagtttgtcattattttcttca |
34455482 |
T |
|
| Q |
301 |
tcagaaaatgttggccggattcatcaagttctttaatcatagcagtggtagatccaagcaatgaatcatggccattttatgttggtgtagtagtacgaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34455481 |
tcagaaaatgttggccggattcatcaagttctttaatcatagcagtggtagatccaagcaatgaatcatggccattttatgttggtgtagtagtacgaat |
34455382 |
T |
|
| Q |
401 |
cttagaattttgtaatata |
419 |
Q |
| |
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| T |
34455381 |
cttagaattttgtaatata |
34455363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 30158832 - 30158758
Alignment:
| Q |
60 |
gatagacttacatttcctttccttaagagtttgattattttttggttcagattcatggcaatgttgaaatgtgga |
134 |
Q |
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||||||||||| |||||||| |||| ||| ||||| ||| |||||||||||||||||| |||||| ||||||| |
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| T |
30158832 |
gatagacttacctttccttttcttaggaggttgatcattacctggttcagattcatggcagtgttgagatgtgga |
30158758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 374
Target Start/End: Complemental strand, 56516778 - 56516631
Alignment:
| Q |
227 |
atgattcatcaatttacggcatttcaattagtccatcgttattattgttttcaagtttgtcattattttcttcatcagaaaatgttggc-cggattcatc |
325 |
Q |
| |
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|||| |||||| ||| ||||||||||||||| |||| ||| ||| |||||||| || ||||| |||||||| | ||||||||| | | | |||||| | |
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| T |
56516778 |
atgactcatcattttgtggcatttcaattagttcatcattactatcattttcaagattctcattgttttcttcgtgagaaaatgtagacacagattcacc |
56516679 |
T |
|
| Q |
326 |
aagttctttaatcatagcagtggtagatccaagcaatgaatcatggcca |
374 |
Q |
| |
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|||||| ||| ||||||||| |||| | || | ||||||||||||||| |
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| T |
56516678 |
aagttc-ttactcatagcagaagtaggttcaggtaatgaatcatggcca |
56516631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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