View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15912_low_3 (Length: 356)
Name: NF15912_low_3
Description: NF15912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15912_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 37268804 - 37268562
Alignment:
| Q |
6 |
gtacattatactaataatttaattttcttttggacttttgtgccatggctacgcgaagacttgtgaattgtcccctttatataataataaaaagaccacc |
105 |
Q |
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| T |
37268804 |
gtacattgtactaataatttaattttcttttggacttttgtgccatggctacgcgaagacttgtgaattgtcccctttatataataataaaaagaccacc |
37268705 |
T |
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| Q |
106 |
atgcttccctcgtgttgtgtacttgtgttcgagtgaatcagaaatt-nnnnnnnnnnnngaaccacgaattaaaaattgggacaatgtaaaattttgcta |
204 |
Q |
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| T |
37268704 |
atgcttccctcgtgttgtgtacttgtgttcgagtgaatcagaaattaaaaaaaaaaaaaaaaccacgaattaaaaattgggacaatgtaaaattttgcta |
37268605 |
T |
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| Q |
205 |
agcatgtttaataataaatactagtacaagtaacaatcaaaag |
247 |
Q |
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| T |
37268604 |
agcatgtttaataataaatactagtacaagtaacaatcaaaag |
37268562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 350
Target Start/End: Complemental strand, 37268498 - 37268459
Alignment:
| Q |
311 |
gtatcatctctttggtccatgcttttaagtatatttatat |
350 |
Q |
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| T |
37268498 |
gtatcatctctttggtccatgcttttaagtatatttatat |
37268459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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