View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15913_high_2 (Length: 377)

Name: NF15913_high_2
Description: NF15913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15913_high_2
NF15913_high_2
[»] chr4 (6 HSPs)
chr4 (8-377)||(36438022-36438391)
chr4 (113-274)||(36377342-36377504)
chr4 (113-274)||(36391315-36391477)
chr4 (24-56)||(36391284-36391316)
chr4 (307-349)||(36377565-36377607)
chr4 (24-56)||(36377311-36377343)
[»] chr3 (5 HSPs)
chr3 (52-151)||(1050127-1050226)
chr3 (52-176)||(1107220-1107344)
chr3 (52-151)||(1077044-1077143)
chr3 (52-151)||(1090850-1090949)
chr3 (52-151)||(1299877-1299976)
[»] chr8 (2 HSPs)
chr8 (125-179)||(23285673-23285727)
chr8 (125-179)||(23392838-23392892)
[»] scaffold0148 (1 HSPs)
scaffold0148 (139-227)||(26186-26274)
[»] chr2 (1 HSPs)
chr2 (127-181)||(37714216-37714270)
[»] chr1 (2 HSPs)
chr1 (121-191)||(47287149-47287219)
chr1 (139-227)||(21935993-21936081)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 36438022 - 36438391
Alignment:
Q  8 gaagcaaaggtgaaataaaacaacacataccaaaaatgaaaaagtctaagcttttgttaggcaaatactcatagattaacatcttctcttctccttgaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36438022 gaagcaaaggtgaaataaaacaacacataccaaaaatgaaaaagtctaagcttttgttaggcaaatactcatagattaacatcttctcttctccttgaac 36438121  T
Q  108 gcagcaacctaagatcctcacaagatttctgtgttgaagttttgaaatcaaaacaacctcatttttaaactcttctatgccttgtccggaatgctttgac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36438122 gcagcaacctaagatcctcacaagatttctgtgttgaagttttgaaatcaaaacaacctcatttttaaactcttctatgccttgtccggaatgctttgac 36438221  T
Q  208 agtctctttactgcaatttccattccattgctcaatataccctaaaaccatcatccaaagtaaacttaatcatttttctttgctagagaaatactgtgac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36438222 agtctctttactgcaatttccattccattgctcaatataccctaaaaccatcatccaaagtaaacttaatcattttcctttgctagagaaatactgtgac 36438321  T
Q  308 tagtgcaactagttctgaaatgtaaacatatgtttaaattttcaaaattagcattgatacaatataatgc 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36438322 tagtgcaactagttctgaaatgtaaacatatgtttaaattttcaaaattggcattgatacaatataatgc 36438391  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 36377342 - 36377504
Alignment:
Q  113 aacctaagatcctcacaagatttctgtgttgaagttttgaaatcaaaac-aacctcatttttaaactcttctatgccttgtccggaatgctttgacagtc 211  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||  |||||||| ||    
T  36377342 aacctaagatcctcacaagatttctgtgttagagttttgaaatcaaaactaacctcattttgaaactcttctatgccttgtcatgaagactttgacattc 36377441  T
Q  212 tctttactgcaatttccattccattgctcaatataccctaaaaccatcatccaaagtaaactt 274  Q
    | || | ||||||| || |||| ||| ||||||| |||| || || |||||||||||||||||    
T  36377442 tattcagtgcaattgcctttccgttggtcaatatgccctgaatccgtcatccaaagtaaactt 36377504  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 36391315 - 36391477
Alignment:
Q  113 aacctaagatcctcacaagatttctgtgttgaagttttgaaatcaaaac-aacctcatttttaaactcttctatgccttgtccggaatgctttgacagtc 211  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||  | || |||||||||||    
T  36391315 aacctaagatcctcacaagatttctgtcttggagttttgaaatcaaaactaacctcattttgaaactcttctatgccttgtcgaggatactttgacagtc 36391414  T
Q  212 tctttactgcaatttccattccattgctcaatataccctaaaaccatcatccaaagtaaactt 274  Q
    | || | ||||||  || |||  ||| ||||||| |||| || ||||||||||||||||||||    
T  36391415 tattcagtgcaatcgcctttctgttggtcaatatgccctgaatccatcatccaaagtaaactt 36391477  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 36391284 - 36391316
Alignment:
Q  24 aaaacaacacataccaaaaatgaaaaagtctaa 56  Q
    |||||||||||||||||||||||||||||||||    
T  36391284 aaaacaacacataccaaaaatgaaaaagtctaa 36391316  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 36377565 - 36377607
Alignment:
Q  307 ctagtgcaactagttctgaaatgtaaacatatgtttaaatttt 349  Q
    |||||||||| |||| |||||||||||||||| ||||||||||    
T  36377565 ctagtgcaacaagttttgaaatgtaaacatatatttaaatttt 36377607  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 36377311 - 36377343
Alignment:
Q  24 aaaacaacacataccaaaaatgaaaaagtctaa 56  Q
    ||||||||| |||||||||||||||||||||||    
T  36377311 aaaacaacaaataccaaaaatgaaaaagtctaa 36377343  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 1050226 - 1050127
Alignment:
Q  52 tctaagcttttgttaggcaaatactcatagattaacatcttctcttctccttgaacgcagcaacctaagatcc-tcacaagatttctgtgttgaagtttt 150  Q
    |||||||||||||| |||| ||| |||||||| | |||  ||||||||||||||| ||| ||||| |||| || | |||||||||| |||||||||||||    
T  1050226 tctaagcttttgttgggcatatattcatagataagcattctctcttctccttgaatgcaacaacc-aagaaccttaacaagatttcggtgttgaagtttt 1050128  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 1107344 - 1107220
Alignment:
Q  52 tctaagcttttgttaggcaaatactcatagattaacatcttctcttctccttgaacgcagcaacctaagatcc-tcacaagatttctgtgttgaagtttt 150  Q
    ||||||||| |||| |||| ||| |||||||| | ||| ||||||||||||||||  || ||||| |||| || | |||||||||| ||||||||||||     
T  1107344 tctaagcttctgttcggcatatattcatagataagcattttctcttctccttgaatacaacaacc-aagaaccttgacaagatttcggtgttgaagtttc 1107246  T
Q  151 gaaatcaaaacaacctcatttttaaa 176  Q
    |||   |||| ||| |||||||||||    
T  1107245 gaacataaaataacttcatttttaaa 1107220  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 1077143 - 1077044
Alignment:
Q  52 tctaagcttttgttaggcaaatactcatagattaacatcttctcttctccttgaacgcagcaacctaagatcc-tcacaagatttctgtgttgaagtttt 150  Q
    |||||||||||||| |||| ||| |||||||| | |||  ||||||||||||||| ||| ||||| |||| || | ||||||||||  ||||||||||||    
T  1077143 tctaagcttttgttgggcatatattcatagataagcattctctcttctccttgaatgcaacaacc-aagaaccttaacaagatttcgatgttgaagtttt 1077045  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 1090949 - 1090850
Alignment:
Q  52 tctaagcttttgttaggcaaatactcatagattaacatcttctcttctccttgaacgcagcaacctaagatcc-tcacaagatttctgtgttgaagtttt 150  Q
    |||||||||||||| |||| ||| |||||||| | |||  ||||||||||||||| ||| ||||| |||| || | ||||||||||  ||||||||||||    
T  1090949 tctaagcttttgttgggcatatattcatagataagcattctctcttctccttgaatgcaacaacc-aagaaccttaacaagatttcgatgttgaagtttt 1090851  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 1299877 - 1299976
Alignment:
Q  52 tctaagcttttgttaggcaaatactcatagattaacatcttctcttctccttgaacgcagcaacctaagatcc-tcacaagatttctgtgttgaagtttt 150  Q
    |||||||||||||| |||| ||| |||||||| | |||  ||||||||||||||| ||| ||||| |||| || | ||||||||||  ||||||||||||    
T  1299877 tctaagcttttgttgggcatatattcatagataagcattctctcttctccttgaatgcaacaacc-aagaaccttaacaagatttcgatgttgaagtttt 1299975  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 23285673 - 23285727
Alignment:
Q  125 tcacaagatttctgtgttgaagttttgaaatcaaaacaacctcatttttaaactc 179  Q
    |||||||||| | |||||||||||||| |||||| ||||| ||||||||||||||    
T  23285673 tcacaagattacggtgttgaagttttgcaatcaacacaacttcatttttaaactc 23285727  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 23392892 - 23392838
Alignment:
Q  125 tcacaagatttctgtgttgaagttttgaaatcaaaacaacctcatttttaaactc 179  Q
    |||||||||| | |||||||||||| | |||||| ||||| ||||||||||||||    
T  23392892 tcacaagattacggtgttgaagtttcgcaatcaacacaacttcatttttaaactc 23392838  T

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Target: scaffold0148 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 26186 - 26274
Alignment:
Q  139 tgttgaagttttgaaatcaaaacaacctcatttttaaactcttctatgccttgtccggaatgctttgacagtctctttactgcaatttc 227  Q
    ||||||||||| | |||||||||||||||||| ||||| || | || |||||||   |||   ||||| ||||||||||||||||||||    
T  26186 tgttgaagtttagcaatcaaaacaacctcattcttaaattcctgtaagccttgtgatgaaacatttgaaagtctctttactgcaatttc 26274  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 37714216 - 37714270
Alignment:
Q  127 acaagatttctgtgttgaagttttgaaatcaaaacaacctcatttttaaactctt 181  Q
    ||||||||||  ||||||||||| | ||||||||||| |||||||||||| ||||    
T  37714216 acaagatttcgatgttgaagtttggcaatcaaaacaatctcatttttaaattctt 37714270  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 47287219 - 47287149
Alignment:
Q  121 atcctcacaagatttctgtgttgaagttttgaaatcaaaacaacctcatttttaaactcttctatgccttg 191  Q
    ||||| ||||||||||||||||| ||||| |  | |||||| |||||||| || || ||||||||||||||    
T  47287219 atcctaacaagatttctgtgttgtagtttggctaccaaaacgacctcattcttgaattcttctatgccttg 47287149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 21936081 - 21935993
Alignment:
Q  139 tgttgaagttttgaaatcaaaacaacctcatttttaaactcttctatgccttgtccggaatgctttgacagtctctttactgcaatttc 227  Q
    ||||||||||| |  ||||||||||| ||||| |||||||| || || |||||||| |||    |||| ||||| ||||||||||||||    
T  21936081 tgttgaagtttcgcgatcaaaacaacttcattcttaaactcctccataccttgtccagaacaacttgaaagtctttttactgcaatttc 21935993  T

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