View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15913_low_2 (Length: 551)
Name: NF15913_low_2
Description: NF15913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15913_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 22 - 431
Target Start/End: Complemental strand, 1373794 - 1373388
Alignment:
| Q |
22 |
tggcaatgcgggtcagtgataaatgcactagctaatctattgggcttattttctagttgtcttgtttaattttgaaaattgatttttaggcaccttcaac |
121 |
Q |
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| T |
1373794 |
tggccatgcgggttagtgataaatgcactagctaatctattgggcttatttgctagttgtctcatttaattttgaaaattgatttttaggcaccttcaac |
1373695 |
T |
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| Q |
122 |
cgcttactagcatcttaaactttcgaaaataccttcatcataagttacgtctcgttcacttcggttcatgagttacaaaaatataccacgattgggaatt |
221 |
Q |
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| T |
1373694 |
cgcttaccagcatcttaaacttttgaaaataccttcatca---gttacgtctcgttcacttcggttcatgagttacaaaaatataccacgattgggaatt |
1373598 |
T |
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| Q |
222 |
atgatgcagtagtaggaaacgaaattgtgtgtaattcattcaaaatttaatcacattcaacacacaaacacccttaaacacttaacacacaatttaaatg |
321 |
Q |
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| T |
1373597 |
atgatgcagtagtaggaagcgaaattgtgtgtaattcattcaaaatttaatcacattcaacacacaaacacccttaaatgcttaacacacagtttaaatg |
1373498 |
T |
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| Q |
322 |
tgaagtgatcgagannnnnnnccatcaataatcgtgtattgttgggctataaactcttaaagataaagctaagatgtgatgaataagtctaatgatgtga |
421 |
Q |
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| T |
1373497 |
tgaagtgatcgagctttttattcatcaataatcgtgaattgttgggctataaactcttaaagataaagctaaggtgtgatgaataagtctaatgatgtga |
1373398 |
T |
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| Q |
422 |
aaaactcaca |
431 |
Q |
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| T |
1373397 |
aaaactcaca |
1373388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 462 - 536
Target Start/End: Complemental strand, 1373390 - 1373316
Alignment:
| Q |
462 |
acattaaccataatgaattaaatgatagagaagttagttttacattaaccataatatgaactaaatgaattatat |
536 |
Q |
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| T |
1373390 |
acattaaccataatgaattaaatgatagagaagttagttttacattaaccataatatgaactaaatgaattatat |
1373316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 286
Target Start/End: Complemental strand, 1375277 - 1375020
Alignment:
| Q |
31 |
gggtcagtgataaatgcactagctaatctattgggcttattttctagtt-gtcttgtttaattttgaaaattgatttttaggcaccttcaaccgcttact |
129 |
Q |
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| T |
1375277 |
gggtcaatgttaaacgcactagcaaatctattgggcttatttgctagttggtctcactttatcttgaaaattgatttttaggcaccttcaattgcttac- |
1375179 |
T |
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| Q |
130 |
agcatcttaaactttcgaaaatac--------cttcatcataagttacgtctcgttcacttcggttcatgagttacaaaaatataccacgattgggaatt |
221 |
Q |
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| T |
1375178 |
-gcaccttaaactatcgaaaacacctccacgactccaccaggagttatgtctcgttatcttcggttcatgagctacaaaaagataccacgattggaaatt |
1375080 |
T |
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| Q |
222 |
atgatgcagtagtaggaaacgaaattgtgtgtaattcattcaaaatttaatcacattcaacacac |
286 |
Q |
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| T |
1375079 |
aggatgc-----taagaagctgaattgtccataattcattcaaaatttaatctcattcaacacac |
1375020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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