View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15913_low_3 (Length: 412)
Name: NF15913_low_3
Description: NF15913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15913_low_3 |
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| [»] chr6 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 2628138 - 2628538
Alignment:
| Q |
12 |
agcagagagagattcctgttgcaataaagagaggacaaaataatgtataagcaagtagatttgcaatcctaacaccaaagaaacatgtttctttcaaaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628138 |
agcagagagagattcctgttgcaataaagagaggacaaaataatgtataagcaagtagatttgcaatcctaacaccaaagaaacatgtttctttcaaaac |
2628237 |
T |
|
| Q |
112 |
ctaatgatgacaccaaagaaatatgtttctttcaaaacctaatgacattaagtataaagttatcctaacatacattatattaaagaaaatgaacctaatc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2628238 |
ctaatgatgacaccaaagaaatatgtttctttcaaaacctaatgacattaagtataaagttgtcctaacatacattatattaaagaaaatgaacctaatc |
2628337 |
T |
|
| Q |
212 |
caacttgaaagaatcatgattttaagatatttttgaaataactaacattgtagtggtgagtgattgattacgtgtatcaattttgttgcttctgagctca |
311 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2628338 |
caacttgaaagaatcatgattttaagatatttttgaaataactaacattgtagtggtgagtaattgattacgtgtatcaattttgttgcttctgagctca |
2628437 |
T |
|
| Q |
312 |
ctgaaattttgaaagataaataagtcctttagtttcaaaatctcataaactgttgcagcatttagttgttacatagaataggcaaagatatttgaaccgc |
411 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628438 |
ctgaaattttgaaagataaataagtcccttagtttcaaaatctcataaactgttgcagcatttagttgttacatagaataggcaaagatatttgaaccgc |
2628537 |
T |
|
| Q |
412 |
c |
412 |
Q |
| |
|
| |
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|
| T |
2628538 |
c |
2628538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 23809592 - 23809191
Alignment:
| Q |
12 |
agcagagagagattcctgttgcaataaagagaggacaaaataatgtataagcaagtagatttgcaatcctaacaccaaagaaacatgtttctttcaaaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23809592 |
agcagagagagattcctgttgcaataaagagaggacaaaataatgtataagcaagtagatttgcaatcctaacaccaaagaaacatgtttctttcaaaac |
23809493 |
T |
|
| Q |
112 |
ctaatgatgacaccaaagaaatatgtttctttcaaaacctaatgacattaagtataaagttatcctaacatacattatattaaagaaaatgaacctaatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23809492 |
ctaatgatgacaccaaagaaatatgtttctttcaaaacctaatgacattaagtataaagttatcctaacatacattatattaaagaaaatgaacctaatc |
23809393 |
T |
|
| Q |
212 |
caacttgaaagaatcatgattttaagatatttttgaaataactaacattgtagtggtgagtgattgattacgtgtatcaattttgttgcttctgagctca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
23809392 |
caacttgaaagaatcatgattttaagatatttttgaaataactaacattgtagtggtgattaattgattacgtgtatcaatttcgttgcttctgagctca |
23809293 |
T |
|
| Q |
312 |
ctgaaattttgaaagataaataagt-cctttagtttcaaaatctcataaactgttgcagcatttagttgttacatagaataggcaaagatatttgaaccg |
410 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
23809292 |
ctgaaattttgaaagataaataagtccctttagtttcaaaatctcataaactgttgcagcatttagttgttacataaaataggcaaagatatttcaaccg |
23809193 |
T |
|
| Q |
411 |
cc |
412 |
Q |
| |
|
|| |
|
|
| T |
23809192 |
cc |
23809191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 22978811 - 22979213
Alignment:
| Q |
12 |
agcagagagagattcctgttgcaataaagagaggacaaaataatgtataagcaagtagatttgcaatcctaacaccaaagaaacatgtttctttcaaaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22978811 |
agcagagagagattcctgttgcaataaagagaggacaaaataatgtataagcaagtagatttgcaatcctaacaccaaagaaacatgtttctttcaaaac |
22978910 |
T |
|
| Q |
112 |
ctaatgatgacaccaaagaaatatgtttctttcaaaacctaatgacatt-aagtataaagttatcctaacatacattatattaaagaaaatgaacctaat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22978911 |
ctaatgatgacaccaaagaaatatgtttctttcaaaacctaatgacatttaagtataaagttatcctaacatacattatattaaagaaaatgaacctaat |
22979010 |
T |
|
| Q |
211 |
ccaacttgaaagaatcatgattttaagatatttttgaaataactaacattgtagtggtgagtgattgattacgtgtatcaattttgttgcttctgagctc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
22979011 |
ccaacttgaaagaatcatgattttaagatatttttgaaataactaacattgtagtggtgattaattgattacgtgtatcaatttcgttgcttctgagctc |
22979110 |
T |
|
| Q |
311 |
actgaaattttgaaagataaataagt-cctttagtttcaaaatctcataaactgttgcagcatttagttgttacatagaataggcaaagatatttgaacc |
409 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
22979111 |
actgaaattttgaaagataaataagtccctttagtttcaaaatctcataaactgttgcagcatttagttgttacataaaataggcaaagatatttcaacc |
22979210 |
T |
|
| Q |
410 |
gcc |
412 |
Q |
| |
|
||| |
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|
| T |
22979211 |
gcc |
22979213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 230 - 412
Target Start/End: Original strand, 40521090 - 40521263
Alignment:
| Q |
230 |
attttaagatatttttgaaataactaacattgtagtggtgagtgattgattacgtgtatcaattttgttgcttctgagctcactgaaattttgaaagata |
329 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
40521090 |
attttaagatatttttgaaataacta---------tggtgagtaattgattacgtgtatcaattttgttgcttctgagctcactgaaattttgaaagtta |
40521180 |
T |
|
| Q |
330 |
aataagtcctttagtttcaaaatctcataaactgttgcagcatttagttgttacatagaataggcaaagatatttgaaccgcc |
412 |
Q |
| |
|
|| |||||| |||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40521181 |
aacaagtcccttagctacaaaatttcataaactgttgcagcatttagttgttacatagaataggcaaaaatatttgaaccgcc |
40521263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 412
Target Start/End: Original strand, 40512294 - 40512472
Alignment:
| Q |
235 |
aagatatttttgaaataactaacattgtagtggtgagtgattgattacgtgtatcaattttgttgcttctgagctcactgaaattttgaaagataaataa |
334 |
Q |
| |
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||||||||||| | |||||||||||| ||||| ||||| ||||| |||||||||| ||| || |||||||| || ||| ||||||||||||||| || |
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| T |
40512294 |
aagatattttttagataactaacattttagtgatgagtaattgaatacgtgtatccctttccttacttctgagaacattgacattttgaaagataaaaaa |
40512393 |
T |
|
| Q |
335 |
gtc-ctttagtttcaaaatctcataaactgttgcagcatttagttgttacatagaataggcaaagatatttgaaccgcc |
412 |
Q |
| |
|
|| | |||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
40512394 |
ttctccttagctccaaaatctcataaactgaagcagcatttaggtgttacatagaataggcaaaaatattggaaccgcc |
40512472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 17501552 - 17501713
Alignment:
| Q |
56 |
gtataagcaagtagatttgcaatcctaacaccaaagaaacatgtttctttcaaaacctaatgatgacaccaaagaaatatgtttctttcaaaacctaatg |
155 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
17501552 |
gtataagcaagtagatttgcaatcctgacaccaaagaaacacactcctttcaagacctaatgatgacacccaagaaatatgtttctcacagaacctaatg |
17501651 |
T |
|
| Q |
156 |
acattaagtataaagttatcctaacatacattatattaaagaaaatgaacctaatccaactt |
217 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17501652 |
ccattaagtataaagctatcgcaacatacattatattaaagaaattgaacctaatccaactt |
17501713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 58
Target Start/End: Original strand, 17501371 - 17501402
Alignment:
| Q |
27 |
ctgttgcaataaagagaggacaaaataatgta |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
17501371 |
ctgttgcaataaagagaggacaaaataatgta |
17501402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 31655937 - 31655870
Alignment:
| Q |
235 |
aagatatttttgaaataactaacattgtagtggtgagtgattgattacgtgtatcaattttgttgctt |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||||| ||||| || ||||||| ||| ||||||| |
|
|
| T |
31655937 |
aagatatttttgagataactaacattgtagagatgagtaattgaatatgtgtatccctttcgttgctt |
31655870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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