View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15913_low_5 (Length: 276)

Name: NF15913_low_5
Description: NF15913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15913_low_5
NF15913_low_5
[»] chr5 (2 HSPs)
chr5 (14-258)||(31374988-31375229)
chr5 (199-256)||(20474104-20474159)
[»] chr7 (2 HSPs)
chr7 (14-258)||(18971096-18971340)
chr7 (14-252)||(18974268-18974507)
[»] chr3 (4 HSPs)
chr3 (14-163)||(17545427-17545580)
chr3 (199-258)||(17545315-17545374)
chr3 (199-256)||(23048527-23048583)
chr3 (199-254)||(50096229-50096283)
[»] chr1 (1 HSPs)
chr1 (199-252)||(8434702-8434754)
[»] chr6 (1 HSPs)
chr6 (227-256)||(11184572-11184601)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 31374988 - 31375229
Alignment:
Q  14 caaaggggaagcacgtgaggttagaaacaaggcaattgggctttgacccaagggtgatggttgacccgaggccacaagttggaacaaaaggaaaacggca 113  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31374988 caaaagggaagcacgtgaggttagaaacaaggaaattgggctttgacccaagggtgatggttgacccgaggccacaagttggaacaaaaggaaaacggca 31375087  T
Q  114 ctttagaataggtagggggatatataaagccagctgcacaacacataaggaggatctgatttttgggtgaaaaggacggttttggggaaagaatggatgc 213  Q
    ||||||||||   | |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  31375088 ctttagaatatagaaggggatatataaagccagctgcacaacacataagga-gatctga-ttttcggtgaaaaggacggtttt-gggaaagaatggatgc 31375184  T
Q  214 cagaagcaagacacacgcacgcatagagagatagaagacggtagg 258  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  31375185 cagaagcaagacacacgcacgcatagagagatagaagacagtagg 31375229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 20474159 - 20474104
Alignment:
Q  199 ggaaagaatggatgccagaagcaagacacacgcacgcatagagagatagaagacggta 256  Q
    ||||||||||||| ||| |||||| || || |||||||||||||||||||||||||||    
T  20474159 ggaaagaatggattcca-aagcaa-acgcatgcacgcatagagagatagaagacggta 20474104  T

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Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 18971340 - 18971096
Alignment:
Q  14 caaaggggaagcacgtgaggttagaaacaaggcaattgggctttgacccaagggtgatggttgacccgaggccacaagttggaacaaaaggaaaacggca 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| | ||    
T  18971340 caaaagggaagcacgtgaggttagaaacaaggcaattgggctttgacccaaaagtgatgtttgacccgaggccacaagttggaacaaaaggaaaatgaca 18971241  T
Q  114 ctttagaataggtagggggatatataaagccagctgcacaacacataa--ggaggatctgatttttgggtgaaaaggacggttttggggaaagaatggat 211  Q
    ||||||||||   | ||  |||||||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  18971240 ctttagaatatagaaggatatatataaagccagctgcacaacacataaggggaggatctga-ttttcggtgaaaaggacggtttt-gggaaagaatggat 18971143  T
Q  212 gccagaagcaagacacacgcacgcatagagagatagaagacggtagg 258  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||    
T  18971142 gtcagaagcaagacacacgcacgcatagagagatagaagacagtagg 18971096  T

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Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 18974507 - 18974268
Alignment:
Q  14 caaaggggaagcacgtgaggttagaaacaaggcaattgggctttgacccaagggtgatggttgacccgaggccacaagttggaacaaaaggaaaacggca 113  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||| ||    
T  18974507 caaaagggaagcacgtgaggttagaaacaaggcaattgggcttcgacccaaaagtgatggttgacccgaggctacaagttggaacaaaaggaaaacgaca 18974408  T
Q  114 ctttagaataggtagggggatatataaagccagctgcacaacacataa--ggaggatctgatttttgggtgaaaaggacggttttggggaaagaatggat 211  Q
    ||||||||||   | ||  |||||||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  18974407 ctttagaatatagaaggatatatataaagccagctgcacaacacataaggggaggatctga-ttttcggtgaaaaggacggtttt-gggaaagaatggat 18974310  T
Q  212 gccagaagcaagacacacgcacgca-tagagagatagaagac 252  Q
    | ||||||||||||||||||||||| ||||||||||||||||    
T  18974309 gtcagaagcaagacacacgcacgcattagagagatagaagac 18974268  T

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Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 17545580 - 17545427
Alignment:
Q  14 caaaggggaagcacgtgaggttagaaacaaggcaattgggctttgacccaagggtg--atggttgacccgaggccacaagttggaacaaaaggaaaacgg 111  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||| ||||||||||||     
T  17545580 caaaagggaagcacgtgaggtaagaaacaaggcaattgggctttgacccaagggtgatatggttgacccgaggccacaagttagaataaaaggaaaacga 17545481  T
Q  112 cactttagaataggtaggggg--atatataaagccagctgcacaacacataagg 163  Q
    ||||||||||||   | ||||  |||||||||||||||||||||||||||||||    
T  17545480 cactttagaatatagaaggggatatatataaagccagctgcacaacacataagg 17545427  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 17545374 - 17545315
Alignment:
Q  199 ggaaagaatggatgccagaagcaagacacacgcacgcatagagagatagaagacggtagg 258  Q
    |||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |||||    
T  17545374 ggaaagaaaggatgccagaagcaaaacacacacacgtatagagagatagaagacagtagg 17545315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 23048527 - 23048583
Alignment:
Q  199 ggaaagaatggatgccagaagcaagacacacgcacgcatagagagatagaagacggta 256  Q
    ||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||||    
T  23048527 ggaaagaatggattcca-aagcaaaacgcacgcacgcatagagagatagaagacggta 23048583  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 50096229 - 50096283
Alignment:
Q  199 ggaaagaatggatgccagaagcaagacacacgcacgcatagagagatagaagacgg 254  Q
    ||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||    
T  50096229 ggaaagaatggattcca-aagcaaaacgcacgcacgcatagagagatagaagacgg 50096283  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 8434702 - 8434754
Alignment:
Q  199 ggaaagaatggatgccagaagcaagacacacgcacgcatagagagatagaagac 252  Q
    ||||||||||||||||| |||||| |  ||||||||||||||||||||||||||    
T  8434702 ggaaagaatggatgcca-aagcaaaatgcacgcacgcatagagagatagaagac 8434754  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 11184601 - 11184572
Alignment:
Q  227 cacgcacgcatagagagatagaagacggta 256  Q
    ||||||||||||||||||||||||||||||    
T  11184601 cacgcacgcatagagagatagaagacggta 11184572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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