View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15913_low_6 (Length: 264)
Name: NF15913_low_6
Description: NF15913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15913_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 52 - 253
Target Start/End: Complemental strand, 7173565 - 7173364
Alignment:
| Q |
52 |
gctgttatttgactattttatcgttgttttctatgcttaagctggatttagttgtttaatgccgctttcattccgcatttgaactttatccgaggaagtg |
151 |
Q |
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| T |
7173565 |
gctgttatttgactattttatcgttgttttctatgcttaagctggatttagttgtttaatgccgctttcattccgcatttgaactttatccgaggaagtg |
7173466 |
T |
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| Q |
152 |
ctagtttcaataggctacactgattttattcaaatgaatatttattcacatttatcttatgagtagcagttgatttgcttgaaaagattaattctttttc |
251 |
Q |
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| T |
7173465 |
ctagtttcaatagcctacactgattttattcaaatgaatatttattcacatttatcttatgagtagcagttgatttgcttgaaaagattaattctttttc |
7173366 |
T |
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| Q |
252 |
at |
253 |
Q |
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|| |
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| T |
7173365 |
at |
7173364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 7168051 - 7167915
Alignment:
| Q |
65 |
tattttatcgttgttttctatgcttaagctggatttagttgtttaatgccgctttcattccgcatttgaactttatccgaggaagtgctagtttcaatag |
164 |
Q |
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||||||||| |||||||||| |||||| ||||||| || ||||||| ||||||| ||| | |||||| | | ||||||||||| || |||||||| |
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| T |
7168051 |
tattttatcactgttttctatacttaagttggatttcattatttaatggcgctttcgttctgactttgaatcctttacgaggaagtgccaggttcaatag |
7167952 |
T |
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| Q |
165 |
gctacactg--attttattcaaatgaatatttattca |
199 |
Q |
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| T |
7167951 |
ccaacaatgtaattttattcaaatgaatatttattca |
7167915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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