View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15914_high_1 (Length: 604)

Name: NF15914_high_1
Description: NF15914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15914_high_1
NF15914_high_1
[»] chr3 (3 HSPs)
chr3 (14-422)||(9465856-9466260)
chr3 (378-422)||(9464719-9464763)
chr3 (243-334)||(44309512-44309606)
[»] chr1 (1 HSPs)
chr1 (433-591)||(51060713-51060871)
[»] chr6 (4 HSPs)
chr6 (224-422)||(21208942-21209138)
chr6 (243-334)||(193120-193214)
chr6 (268-408)||(4166644-4166785)
chr6 (268-408)||(4207318-4207459)
[»] chr4 (4 HSPs)
chr4 (210-310)||(36688847-36688946)
chr4 (232-350)||(41864566-41864685)
chr4 (320-396)||(41864476-41864553)
chr4 (379-416)||(41865615-41865652)
[»] chr2 (1 HSPs)
chr2 (378-422)||(9440452-9440496)


Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 9465856 - 9466260
Alignment:
Q  14 cacagatctcaaaatcaaaagaaatgaatgagggagggagggagagagaggtatgcctatggagtgagaacctgagagtgaaaccagggaaagaggaatg 113  Q
    |||||||||||||||||||||||||||| ||||||| ||     |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  9465856 cacagatctcaaaatcaaaagaaatgaaagagggagagaa----agagaggtatgcctatggagtgagaacctgggagtgaaaccagagaaagaggaatg 9465951  T
Q  114 atggtgaaggtgaaagtgacaaccccaaatactggtgtgagagtgagaacctaagaactcagattggtattgatgttagtgaaatgttcttcgttcataa 213  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||    
T  9465952 acggtgaaggtgaaggtgacaaccccaaatactggtgtgagagtgagaacctaagaactcagactggtgttgatgttggtgaaatgttcttcgttcataa 9466051  T
Q  214 atgatttccagacaattaataaaaaatacattgaagaaattacattggccaaaatagtatattaggttgttttggggagatactttgatttaaacaataa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9466052 atgatttccagacaattaataaaaaatacattgaagaaattatgttggccaaaatagtatattaggttgttttggggagatactttgatttaaacaataa 9466151  T
Q  314 aagggtcaatttagaattacacataaaactggttcacttgctattaaatgttaaagaaactttctgtatggtacacaaaaagagttacttgtgtaggtta 413  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9466152 aaaggtcaatttagaattacacataaaactggttcacttgctattaaaggttaaagaaactttttgtatggtacacaaaaagagttacttgtgtaggtta 9466251  T
Q  414 aatgccacc 422  Q
    |||||||||    
T  9466252 aatgccacc 9466260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 9464763 - 9464719
Alignment:
Q  378 tgtatggtacacaaaaagagttacttgtgtaggttaaatgccacc 422  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  9464763 tgtatgatacacaaaaagagttacttgtgtaggttaaatgccacc 9464719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 44309606 - 44309512
Alignment:
Q  243 attgaagaaattacattggccaaaatagtatattaggttgttttggggagatactttgatttaaacaataaaa---gggtcaatttagaattaca 334  Q
    |||| ||||||||  | ||||||| |||||||||||||||| |||||||| | ||||||||||||| |  |||   |||||||||||||||||||    
T  44309606 attgcagaaattaattaggccaaagtagtatattaggttgtcttggggaggttctttgatttaaaccactaaaggggggtcaatttagaattaca 44309512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 433 - 591
Target Start/End: Complemental strand, 51060871 - 51060713
Alignment:
Q  433 tgatattgtctttgttggatggactttagaaattttatataaactttttatgactcaatcacgaagtccttttactcatgttcaacccttatgagtactg 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51060871 tgatattgtctttgttggatggactttagaaattttatataaactttttatgactcaatcacgaagtccttttactcatgttcaaccctcatgagtactg 51060772  T
Q  533 catttgcatatgcatcctaatcacggtgaaacgatcaggaaaatttacatagttctttt 591  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51060771 cgtttgcatatgcatcctaatcacggtgaaacgatcaggaaaatttatatagttctttt 51060713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 224 - 422
Target Start/End: Complemental strand, 21209138 - 21208942
Alignment:
Q  224 gacaattaataaaaaatacattgaagaaattacattggccaaaatagtatattaggttgttttggggagatactttgatttaaacaataaaa-gggtcaa 322  Q
    ||||||||||||||||||  | ||||||||||  ||| | ||| ||||||||||||||||||| ||||| || ||||||| ||||||||||| |||||||    
T  21209138 gacaattaataaaaaata--tcgaagaaattaatttgacaaaagtagtatattaggttgttttagggaggtagtttgattcaaacaataaaatgggtcaa 21209041  T
Q  323 tttagaattacacataaaactggttcacttgctattaaatgttaaagaaactttctgtatggtacacaaaaagagttacttgtgtaggttaaatgccacc 422  Q
    ||||||||||| | |||| || || ||| |  ||||||| ||||||  |||||| |||||| ||| |||||||||||  ||||||| | |||||| ||||    
T  21209040 tttagaattactcttaaacct-gtccacctaatattaaaggttaaaataactttttgtatgatacccaaaaagagttggttgtgtatgctaaatgtcacc 21208942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 193120 - 193214
Alignment:
Q  243 attgaagaaattacattggccaaaatagtatattaggttgttttggggagatactttgatttaaacaataaaa---gggtcaatttagaattaca 334  Q
    |||| ||||||||  | ||||||| |||||||||||||||| |||||||| | ||||||||||||| |  |||   |||||||||||||||||||    
T  193120 attgcagaaattaattaggccaaagtagtatattaggttgtcttggggaggttctttgatttaaaccactaaaggggggtcaatttagaattaca 193214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 408
Target Start/End: Complemental strand, 4166785 - 4166644
Alignment:
Q  268 tagtatattaggttgttttggggagatactttgatttaaacaataaaa-gggtcaatttagaattacacataaaactggttcacttgctattaaatgtt- 365  Q
    |||||||||| ||||||||| |||| || |||  ||||||||| |||| |||||||||||| |||| ||||||||| ||||||| || | ||||| |||     
T  4166785 tagtatattatgttgttttgaggaggtattttagtttaaacaacaaaaagggtcaatttagtattagacataaaaccggttcacctgttgttaaaggttg 4166686  T
Q  366 --aaagaaactttctgtatggtacacaaaaagagttacttgtgta 408  Q
      ||||||| |   |||||||||| |||||||||||  |||||||    
T  4166685 aaaaagaaaat---tgtatggtacccaaaaagagttggttgtgta 4166644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 408
Target Start/End: Complemental strand, 4207459 - 4207318
Alignment:
Q  268 tagtatattaggttgttttggggagatactttgatttaaacaataaaa-gggtcaatttagaattacacataaaactggttcacttgctattaaatgtt- 365  Q
    |||||||||| ||||||||| |||| || |||  ||||||||| |||| |||||||||||| |||| ||||||||| ||||||| || | ||||| |||     
T  4207459 tagtatattatgttgttttgaggaggtattttagtttaaacaacaaaaagggtcaatttagtattagacataaaaccggttcacctgttgttaaaggttg 4207360  T
Q  366 --aaagaaactttctgtatggtacacaaaaagagttacttgtgta 408  Q
      ||||||| |   |||||||||| |||||||||||  |||||||    
T  4207359 aaaaagaaaat---tgtatggtacccaaaaagagttggttgtgta 4207318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 36688847 - 36688946
Alignment:
Q  210 ataaatgatttccagacaattaataaaaaatacattgaagaaattacattggccaaaatagtatattaggttgttttggggagatactttgatttaaaca 309  Q
    |||||||||||| ||||||||||||||| | | |||| ||||||||  ||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  36688847 ataaatgatttctagacaattaataaaagaaatattggagaaattaatttgaccaaaatagtatattgggttgtttt-gggaggtactttgatttaaaca 36688945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 350
Target Start/End: Complemental strand, 41864685 - 41864566
Alignment:
Q  232 ataaaaaatacattgaagaaattacattggccaaaatagtatattaggttgttttggggagatactttgatttaaacaataaaagggtc-aatttagaat 330  Q
    |||||||||| |||| ||||||||  ||||  ||||||  ||||| ||||||||| ||||| |||||||| |||||||| ||  ||| | ||||||||||    
T  41864685 ataaaaaatatattggagaaattaatttggttaaaatataatattgggttgttttagggaggtactttgaattaaacaacaattggggccaatttagaat 41864586  T
Q  331 tacacataaaactggttcac 350  Q
    ||||| |||||||| |||||    
T  41864585 tacacttaaaactgattcac 41864566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 41864553 - 41864476
Alignment:
Q  320 caatttagaattacacataaaactggttcacttgctattaaatgtt-aaagaaactttctgtatggtacacaaaaaga 396  Q
    |||||||||||||||| |||||||| ||||| ||||  |||| ||| ||| ||||||| |||||||||||||||||||    
T  41864553 caatttagaattacacttaaaactgattcacctgctgctaaaggttaaaaaaaactttttgtatggtacacaaaaaga 41864476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 41865615 - 41865652
Alignment:
Q  379 gtatggtacacaaaaagagttacttgtgtaggttaaat 416  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  41865615 gtatgatacacaaaaagagttacttgtgtaggttaaat 41865652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 9440452 - 9440496
Alignment:
Q  378 tgtatggtacacaaaaagagttacttgtgtaggttaaatgccacc 422  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||    
T  9440452 tgtatgatacacaaaaagagttacttgtgtatgttaaatgtcacc 9440496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University