View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15914_low_1 (Length: 693)

Name: NF15914_low_1
Description: NF15914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15914_low_1
NF15914_low_1
[»] chr5 (2 HSPs)
chr5 (237-678)||(39184739-39185182)
chr5 (539-676)||(8730292-8730427)
[»] chr1 (5 HSPs)
chr1 (16-220)||(32398927-32399132)
chr1 (528-677)||(42373538-42373686)
chr1 (396-677)||(17032737-17033026)
chr1 (524-678)||(19597952-19598107)
chr1 (526-594)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (520-637)||(16501182-16501300)
chr4 (526-594)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (519-645)||(31902910-31903036)
chr2 (490-645)||(39339357-39339512)
chr2 (539-676)||(25505480-25505615)
chr2 (534-647)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (521-673)||(9519052-9519205)
chr8 (526-588)||(34866640-34866702)
chr8 (534-613)||(10551752-10551832)
chr8 (526-594)||(34389590-34389658)
[»] chr7 (6 HSPs)
chr7 (526-677)||(37792747-37792899)
chr7 (526-588)||(38484991-38485053)
chr7 (490-645)||(47326396-47326551)
chr7 (519-588)||(3420242-3420311)
chr7 (534-637)||(12480298-12480402)
chr7 (526-594)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (562-658)||(25595121-25595217)
chr3 (524-645)||(17501759-17501880)
chr3 (534-677)||(5555991-5556136)
chr3 (537-635)||(1653452-1653550)
[»] chr6 (1 HSPs)
chr6 (526-637)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 237 - 678
Target Start/End: Complemental strand, 39185182 - 39184739
Alignment:
Q  237 gggttgtttaagtttttgtgttactgtttggtggtgttgtcaccagctttccgacggccatacacggtgggtagtggtgctggttgcttggttttttg-- 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  39185182 gggttgtttaagtttttgtgttactgtttggtggtgttgtcaccagctttccgacggccatacacggtgggtagtggtgctggttgcttggttttttttt 39185083  T
Q  335 -gcggttttgggtatatatcgacnnnnnnnctctgggtgtctcacatgctttcaggtttggtactggttttggtgattttgttgctgagatcggcttcga 433  Q
     | |||||| |||||||||||||       ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |    
T  39185082 tgtggttttaggtatatatcgactttttt-ctctgggtgtctcacgtgctttcacgttcggtactggttttggtgattttgttgctgagatcagcttcca 39184984  T
Q  434 ttgggtcagttccgcaggttaatggggttggttgtttactccggcgacatacgttttctccatgtcaccggcagctgcatttctctgatttaggttgtga 533  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39184983 ttcggtcagttccgcaggttcatggggttggttgtttactccggcgacatatgttttctccatgtcaccggcagctgcatttctctgatttaggttgtga 39184884  T
Q  534 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtt 633  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39184883 ttctgcttcaaactggcgtcgttgcctatgttttgtagttgtgtttcgtcttcctatatatatgttttgtgttgctgtctgttttcttggtgaggcggtt 39184784  T
Q  634 tggcagcgtagttttggctctatcgttggcttgtgggtatattct 678  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  39184783 tggcggcgtagttttggctctatcgttggcttgtgggtatattct 39184739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 539 - 676
Target Start/End: Original strand, 8730292 - 8730427
Alignment:
Q  539 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 638  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  8730292 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 8730389  T
Q  639 gcgtagttttggctctatcgttggcttgtgggtatatt 676  Q
    | |||||| || |||||||||||| | |||||||||||    
T  8730390 gtgtagttctgtctctatcgttggttggtgggtatatt 8730427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 32398927 - 32399132
Alignment:
Q  16 aatgaacaacaaaatgtagcaataaatttgggttattgcaaaaccaacataggtctgatataaaa-ataagttcaccaatgagttggtttcagactatac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  32398927 aatgaacaacaaaatgtagcaataaatttgggttattgcaaaaccaacatagatctgatataaaaaataagttcaccaatgagttggtttcagactatac 32399026  T
Q  115 gaatgttagtgagatgttgaggggtgggaggcgaatttaggagctgttgttggtgatgtgaatagaaggttgtgcagggttctgggtctagctgaagaag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32399027 gaatgttagtgagatgttgaggggtgggaggcgaatttaggagctgttgttggtgatgtgaatagaatgttgtgcagggttctgggtctagctgaagaag 32399126  T
Q  215 gttaag 220  Q
    ||||||    
T  32399127 gttaag 32399132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 528 - 677
Target Start/End: Original strand, 42373538 - 42373686
Alignment:
Q  528 ttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgag 627  Q
    ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgag 42373637  T
Q  628 gcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattc 677  Q
    | |||||| | ||||||||||| ||||||| |||| ||||||||||||||    
T  42373638 gtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtatattc 42373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 677
Target Start/End: Original strand, 17032737 - 17033026
Alignment:
Q  396 actggttttggtgattttgttgctgagatcggcttcgattgggtcagttccgcaggttaatggggttggtt---gtttactccggcgacatacgttttct 492  Q
    ||||||||||||  | ||||||||||||| ||| ||||||  |||||||  ||||||| ||||  ||||||   |||||||||| ||||  | || | ||    
T  17032737 actggttttggttgtgttgttgctgagattggcgtcgattcagtcagttttgcaggttcatggacttggtttttgtttactccgacgacggaagtctcct 17032836  T
Q  493 ccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgtttt-gtagttgtgtttcgtcttcctata 591  Q
    || |||||||||| ||  ||||| | ||||   ||||||||||| |||||| || || |||  | ||  |||||| || ||||  |||||||||||| ||    
T  17032837 ccttgtcaccggcggccacatttttttgatcagggttgtgattctgcttcacaccggggtcactacctgtgtttttgttgttggatttcgtcttcctcta 17032936  T
Q  592 gatatgtt---ttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatattc 677  Q
    |||||||    || ||||||||  ||||||||||||||| ||||||||||| |||| ||||| |||||||| ||  |||||||| |||||    
T  17032937 gatatgtgatattatgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgctgatttgtgggtttattc 17033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 678
Target Start/End: Original strand, 19597952 - 19598107
Alignment:
Q  524 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 622  Q
    ||||||||| |||| ||||| || ||||||||||||| |||| ||| |||| ||||| ||||||| | | | ||| |||| ||||||| ||| |||||||    
T  19597952 taggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttcatcttccttttggtttgtgtttgggttgctgcctg-tttcttg 19598050  T
Q  623 gtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatattct 678  Q
    | |||| |||||||  ||||||  |||| |||| ||| ||| ||||| |||||||||    
T  19598051 gcgaggtggtttggaggcgtagcctttgtctctttcgatggtttgtgagtatattct 19598107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 526 - 594
Target Start/End: Original strand, 41919898 - 41919966
Alignment:
Q  526 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 594  Q
    ||||||| |||||||||||||  |||||||||||| |||||||| || |  |||| ||||||| |||||    
T  41919898 ggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagat 41919966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 520 - 637
Target Start/End: Original strand, 16501182 - 16501300
Alignment:
Q  520 gatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgtttt 618  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||| ||| ||||  ||| |||||||| || || ||| ||||||| || |||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctctaaatttgtgtttgtgtggccgtctgtttt 16501281  T
Q  619 cttggtgaggcggtttggc 637  Q
    |||||||||||||||||||    
T  16501282 cttggtgaggcggtttggc 16501300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 594
Target Start/End: Original strand, 30963879 - 30963947
Alignment:
Q  526 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 594  Q
    ||||||| |||| |||||||| ||||||| ||||| |||||||| ||||  |||||||||||| |||||    
T  30963879 ggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagat 30963947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 519 - 645
Target Start/End: Complemental strand, 31903036 - 31902910
Alignment:
Q  519 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttt 617  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| ||||| | | || |||||||||| || ||    
T  31903036 tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttg-tt 31902938  T
Q  618 tcttggtgaggcggtttggcagcgtagt 645  Q
    ||||| ||||||  |||||| |||||||    
T  31902937 tcttgctgaggctatttggcggcgtagt 31902910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 490 - 645
Target Start/End: Complemental strand, 39339512 - 39339357
Alignment:
Q  490 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 589  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||| | ||||| ||| | |||||||| ||||  |||| |||||||     
T  39339512 tctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctc 39339413  T
Q  590 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 645  Q
    ||||| | | |||||||||||||||| |||||||||||||  ||||||| |||||||    
T  39339412 tagatctatatttgtgttgctgtctg-tttcttggtgaggatgtttggcggcgtagt 39339357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 539 - 676
Target Start/End: Complemental strand, 25505615 - 25505480
Alignment:
Q  539 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 638  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  25505615 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 25505518  T
Q  639 gcgtagttttggctctatcgttggcttgtgggtatatt 676  Q
    | |||||| || |||||||||||| | |||||||||||    
T  25505517 gtgtagttctgtctctatcgttggttggtgggtatatt 25505480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 647
Target Start/End: Complemental strand, 22886124 - 22886011
Alignment:
Q  534 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttt-tgtgttgctgtctgttttcttggtgaggcggt 632  Q
    |||||||||| |||||||||| |  || |||||||| |||| ||||| ||||||| | |||||||   ||||||||||  ||||| |||||||||| |||    
T  22886124 ttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgttt-cttggtgaggtggt 22886026  T
Q  633 ttggcagcgtagttt 647  Q
    ||||| |||| ||||    
T  22886025 ttggcggcgtggttt 22886011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 673
Target Start/End: Original strand, 9519052 - 9519205
Alignment:
Q  521 atttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttc 619  Q
    |||| ||||||| | |||||||||||  |||||| ||||| |||||||| |||| |||||||||| || ||||| ||| ||||| ||||||| |||||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgctgt-tgttttc 9519150  T
Q  620 ttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtat 673  Q
     |||||||| || ||||| | |||| ||||| | |||||| ||| ||||||||||    
T  9519151 atggtgaggtgggttggcggtgtagtttttgtccctatcgctggtttgtgggtat 9519205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 588
Target Start/End: Complemental strand, 34866702 - 34866640
Alignment:
Q  526 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 588  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||    
T  34866702 ggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcct 34866640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 613
Target Start/End: Original strand, 10551752 - 10551832
Alignment:
Q  534 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtct 613  Q
    ||||||||||||  ||||||| ||||| || ||||| |||| ||||||||||||| ||||| | | |||||||||||||||    
T  10551752 ttccgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtct 10551832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 526 - 594
Target Start/End: Complemental strand, 34389658 - 34389590
Alignment:
Q  526 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 594  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| || |  ||||||| |||| |||||    
T  34389658 ggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagat 34389590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 677
Target Start/End: Original strand, 37792747 - 37792899
Alignment:
Q  526 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttggt 624  Q
    ||||||| ||||||||||||| |||||||||| || |||||||  |||| ||||| |||| || | |||  || |||||||||||||||| |||||||||    
T  37792747 ggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctcttgatccgtgtttgtgttgctgtctg-tttcttggt 37792845  T
Q  625 gaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattc 677  Q
      |  |||||||| ||||||||| || |||| ||||||| |||||||| |||||    
T  37792846 tggctggtttggcggcgtagtttctgtctctgtcgttggtttgtgggtttattc 37792899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 588
Target Start/End: Original strand, 38484991 - 38485053
Alignment:
Q  526 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 588  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||| ||   |||||||||||||    
T  38484991 ggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcct 38485053  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 645
Target Start/End: Complemental strand, 47326551 - 47326396
Alignment:
Q  490 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 589  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||  || |||| ||||| |||||||| ||||  |||| |||||||     
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  590 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 645  Q
    |||||   | ||||||||||||  ||||| ||||||||||  ||||||| |||||||    
T  47326451 tagatcaatatttgtgttgctgcttgttt-cttggtgaggatgtttggcggcgtagt 47326396  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 3420311 - 3420242
Alignment:
Q  519 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 588  Q
    |||| ||||||||| ||||||||| ||| ||||||| ||| | |||||||| |||  |||||||||||||    
T  3420311 tgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 637
Target Start/End: Original strand, 12480298 - 12480402
Alignment:
Q  534 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttc-gtcttcctatagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 631  Q
    |||| |||||||| ||||||| ||| | |||||||| ||||  |||| |||||||| | ||| ||| ||||||| ||  |||||||||||||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct-gatctgtatttgtgtggccatctgttttcttggtgaggcgg 12480396  T
Q  632 tttggc 637  Q
    ||||||    
T  12480397 tttggc 12480402  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 526 - 594
Target Start/End: Original strand, 38305676 - 38305744
Alignment:
Q  526 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 594  Q
    ||||||| ||||||||||||| ||||| | ||||  |||||||| ||||  |||||||||||| |||||    
T  38305676 ggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagat 38305744  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 562 - 658
Target Start/End: Complemental strand, 25595217 - 25595121
Alignment:
Q  562 tgttttgtagttgtgtttcgtcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcg 658  Q
    |||||||| ||| ||||||||| |||| ||||| |||||| |||||||||  ||||| |||||||||||||||||||| |||||||| | ||||||||    
T  25595217 tgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcg 25595121  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 645
Target Start/End: Complemental strand, 17501880 - 17501759
Alignment:
Q  524 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 622  Q
    ||||||||| ||||||||||||||| |||| ||| || |||||||| |||   |||||||||||| ||||| | | |||||||||||  || |||| |||    
T  17501880 taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctatttt-ttg 17501782  T
Q  623 gtgaggcggtttggcagcgtagt 645  Q
    ||||||  |||||||||||||||    
T  17501781 gtgaggatgtttggcagcgtagt 17501759  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 677
Target Start/End: Original strand, 5555991 - 5556136
Alignment:
Q  534 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta-tagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 631  Q
    |||||||||| || ||||||| ||||| |||| | | |||| | |||||||||  | ||||||||| ||||||||||||  ||||||| ||||| |||||    
T  5555991 ttccgcttcagaccggcgtcgctgcccgtgttcttttgttgggcttcgtcttcaaaatagatatgtgtttgtgttgctgcttgttttcatggtgtggcgg 5556090  T
Q  632 tttggcagcgtagttttggctctatcgttggcttgtgggtatattc 677  Q
    || ||| || | |||||| |||| ||| ||| ||||||||||||||    
T  5556091 ttaggctgcattgttttgtctctgtcgctggtttgtgggtatattc 5556136  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 635
Target Start/End: Complemental strand, 1653550 - 1653452
Alignment:
Q  537 cgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct--atagatatgttttgtgttgctgtctgttttcttggtgaggcggttt 634  Q
    |||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||  |||  |||| |||||||||||| ||| |||||| |||||| |||||    
T  1653550 cgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcctccatatttatg-tttgtgttgctgcctg-tttcttcgtgaggaggttt 1653453  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 637
Target Start/End: Original strand, 12793553 - 12793664
Alignment:
Q  526 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatat-gttttgtgttgctgtctgttttcttggt 624  Q
    ||||||| || |||||||||||||||||||||||| |||||||  | ||  |||||||||||| | ||| |   |||||||||||||||| |||||||||    
T  12793553 ggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttgctgtctg-tttcttggt 12793651  T
Q  625 gaggcggtttggc 637  Q
    ||||  |||||||    
T  12793652 gagggtgtttggc 12793664  T

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