View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15914_low_3 (Length: 490)
Name: NF15914_low_3
Description: NF15914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15914_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 12 - 474
Target Start/End: Complemental strand, 25539981 - 25539519
Alignment:
| Q |
12 |
tcatcaacattccttgtattttaggtcgatttgcttgctttctttgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgtt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25539981 |
tcatcaacattccttgtattttaggtcgatttgcttgctttctttgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgtt |
25539882 |
T |
|
| Q |
112 |
catccatgttccttgtgaccttgttttatccatgattttttgttgttaattttcttgtttatgttaaaatgtaagacacttatcacatttgcagcaaaag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25539881 |
tatccatgttccttgtgaccttgttttatccatgattttttgttgttaattttcttgtttatgttaaaatgtaagacacttatcacatttgcagcaaaag |
25539782 |
T |
|
| Q |
212 |
taatatttcttctcaaatgaagcaactgcttcctaaacattagaacactgtgaagttttatggattaggaattaaacacacagaaccatggtcaaaggtt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25539781 |
taatatttcttctcaaatgaagcaactgcttcctaaacattagaacactgtgaagttttatggattaggaattaaacacacagaaccatggtcaaaggtt |
25539682 |
T |
|
| Q |
312 |
tctgtgtcaaccaacaattttccatcttcaagagtatgaaacaaagtcaattagagaaacatagttgtatatgacaggtacacaatccttaacttggtct |
411 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25539681 |
tctgtgtcaaccaacaattctccatcttcaagagtatgaaacaaagtcaattagagaaacatagttgtatatgacaggtacacaatccttaacttggtct |
25539582 |
T |
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| Q |
412 |
acttccaaatgcaactaggttcctaagaacacattcagttacttggtttacgatcaaatgtgg |
474 |
Q |
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| T |
25539581 |
acttccaaatgcaactaggttcctaagaacacattcagttacttggtttacgatcaaatgtgg |
25539519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 25517596 - 25517703
Alignment:
| Q |
12 |
tcatcaacattccttgtattttaggtcgatttgcttgctttctttgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgtt |
111 |
Q |
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|||||||| ||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517596 |
tcatcaacgttccttgtattttgggtcgatttgcctgctttttatgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgtt |
25517695 |
T |
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| Q |
112 |
catccatg |
119 |
Q |
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|||||||| |
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| T |
25517696 |
catccatg |
25517703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 25517697 - 25517778
Alignment:
| Q |
139 |
atccatgattttttgttgttaatttt-cttgtttatgttaaaatgtaagacacttatcacatttgcagcaaaagtaatatttct |
221 |
Q |
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| T |
25517697 |
atccatgattttt-gttgttaaatttgcttgtttatgttaaa-tgtaagacacttctcacatttgcagcaaaagtaatatttct |
25517778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 454
Target Start/End: Complemental strand, 25534207 - 25534109
Alignment:
| Q |
356 |
agtcaattagagaaacatagttgtatatgacaggtacacaatccttaacttggtctacttccaaatgcaactaggttcctaagaacacattcagttact |
454 |
Q |
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||||||||||||||||||||||| ||| | ||||||||| || | ||||||| ||||| |||||||| | || ||||||||||||||||||| |||| |
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| T |
25534207 |
agtcaattagagaaacatagttgcatagaaaaggtacacattcagttacttggtttactttcaaatgcatcgagattcctaagaacacattcagctact |
25534109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 454
Target Start/End: Original strand, 25516206 - 25516304
Alignment:
| Q |
356 |
agtcaattagagaaacatagttgtatatgacaggtacacaatccttaacttggtctacttccaaatgcaactaggttcctaagaacacattcagttact |
454 |
Q |
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| T |
25516206 |
agtcaattagaaaaacatgtttgcatatgaaaggtacacattcagttacttggtttactttcaaatgcatcgaggttcctaagaacacatccagctact |
25516304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 25540916 - 25540849
Alignment:
| Q |
178 |
aaatgtaagacacttatcacatttgcagcaaaagtaatatttcttctcaaatgaagcaactgcttcct |
245 |
Q |
| |
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||||||||||| | | |||||| ||||||||||||| |||||||| || ||||||| ||||||||||| |
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| T |
25540916 |
aaatgtaagactcctctcacatatgcagcaaaagtagtatttcttgtctaatgaaggaactgcttcct |
25540849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 320
Target Start/End: Complemental strand, 25526380 - 25526245
Alignment:
| Q |
182 |
gtaagacacttatcacatttgcagcaaaagtaatatttcttctcaaatgaagcaactgcttcct---aaacattagaacactgtgaagttttatggatta |
278 |
Q |
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||||||||| | ||||||||||| ||||||| |||||||||||| ||| |||||| |||| ||||||||||||| || |||||| | ||||| |
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| T |
25526380 |
gtaagacacctctcacatttgcatcaaaagt-----ttcttctcaaataaagaaactgcatccttataaacattagaacagagt-aagtttctttgatta |
25526287 |
T |
|
| Q |
279 |
ggaattaaacacacagaaccatggtcaaaggtttctgtgtca |
320 |
Q |
| |
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||||| |||| |||| || || |||||| ||||||||||||| |
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| T |
25526286 |
ggaataaaacgcacaaaatcagggtcaatggtttctgtgtca |
25526245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 454
Target Start/End: Complemental strand, 25526205 - 25526107
Alignment:
| Q |
356 |
agtcaattagagaaacatagttgtatatgacaggtacacaatccttaacttggtctacttccaaatgcaactaggttcctaagaacacattcagttact |
454 |
Q |
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|||||||||||||||||||| || |||||| | | ||||| || | | || || ||||| |||||||| | || ||||||||||||||||||| |||| |
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| T |
25526205 |
agtcaattagagaaacatagctgcatatgaaatgcacacattcagttagtttgtttactttcaaatgcatcgagattcctaagaacacattcagctact |
25526107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 458
Target Start/End: Original strand, 27123316 - 27123344
Alignment:
| Q |
430 |
gttcctaagaacacattcagttacttggt |
458 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27123316 |
gttcctaagaacacattcagttacttggt |
27123344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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