View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15914_low_9 (Length: 322)
Name: NF15914_low_9
Description: NF15914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15914_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 1628928 - 1629229
Alignment:
| Q |
15 |
gtcgagagatcaaggagatgagcaactgccaaaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacagg |
114 |
Q |
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| T |
1628928 |
gtcgagagatcaaggagatgagcaactgccacaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatatttttaaaatgacaag |
1629027 |
T |
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| Q |
115 |
atgcttatttgttacttagtttctgacatattgactttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaat |
214 |
Q |
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| T |
1629028 |
atgcttatttgttacttagtttctgacatattgactttttaaacatagatccgctggatcatcaaagttgaacttgtaaagtagtacaaaattaaagaat |
1629127 |
T |
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| Q |
215 |
atgaata---atatctctctcaatatacaaattaaagaatattgacacattttctttttagaattacaatgaatttaattacagataactatgtagaata |
311 |
Q |
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| T |
1629128 |
atgaataattatatctctctcaatatacaaattaaagaatattgacacattttcttttaagaattacaatgaatttaattacaaataactatgtagaata |
1629227 |
T |
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| Q |
312 |
at |
313 |
Q |
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|| |
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| T |
1629228 |
at |
1629229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 10821709 - 10821438
Alignment:
| Q |
18 |
gagagatcaaggagatgagcaactgccaaaggcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatg |
117 |
Q |
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|||| |||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||| || ||| | | ||||| ||| ||| ||| |
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| T |
10821709 |
gagatatcaaggagatgagcaactgtcacgcgcgacgcatggcctcatgcgcctcgcgcataggactt--ttctattttt-tttttaaaattacaagatt |
10821613 |
T |
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| Q |
118 |
cttatttgttacttagtttctgacatattgactttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatg |
217 |
Q |
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|||||||||||| |||||| ||| |||||||||||||||||||| ||| || | |||||||||| ||||||||| |||| ||||||| ||||||| |
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| T |
10821612 |
cttatttgttacatagtttatgatatattgactttttaaacatatatcagttgaatcatcaaaggtgaacttgtaaagttgtacaaag-----gaatatg |
10821518 |
T |
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| Q |
218 |
aataata---tctctctcaatatacaaattaaagaatattgacacattttctttttagaattacaatgaatttaattaca |
294 |
Q |
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| T |
10821517 |
aataataatatctctctcaatatacaaattaaagaatattgactcatgttcttacaaaaattacaatgaatttaattaca |
10821438 |
T |
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