View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15915_high_1 (Length: 701)

Name: NF15915_high_1
Description: NF15915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15915_high_1
NF15915_high_1
[»] chr8 (4 HSPs)
chr8 (143-685)||(35594023-35594565)
chr8 (401-685)||(35568116-35568400)
chr8 (401-685)||(35582847-35583131)
chr8 (62-125)||(34615500-34615563)
[»] chr4 (6 HSPs)
chr4 (31-127)||(6842243-6842339)
chr4 (35-128)||(52462349-52462442)
chr4 (91-127)||(46854312-46854348)
chr4 (31-125)||(29322215-29322310)
chr4 (71-125)||(16491292-16491346)
chr4 (31-83)||(46854340-46854391)
[»] scaffold0373 (1 HSPs)
scaffold0373 (31-127)||(3861-3957)
[»] chr2 (1 HSPs)
chr2 (31-127)||(6149523-6149619)
[»] chr3 (1 HSPs)
chr3 (31-125)||(46224714-46224808)
[»] chr1 (2 HSPs)
chr1 (31-125)||(22667885-22667979)
chr1 (481-538)||(26859934-26859991)
[»] chr6 (1 HSPs)
chr6 (62-125)||(34376867-34376930)


Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 143 - 685
Target Start/End: Complemental strand, 35594565 - 35594023
Alignment:
Q  143 ttataaaaagtaagcttgagcgattttataaatgcaagccaaatcccatggttgatgtgtacacaaaactgacaacacgtggacttttcgttcgcactgt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594565 ttataaaaagtaagcttgagcgattttataaatgcaagccaaatcccatggttgatgtgtacacaaaactgacaacacgtggacttttcgttcgcactgt 35594466  T
Q  243 agttgataaaattgagcctcatgtttcatttcataccttgcataataacnnnnnnncctgagcctctagtttcattatctctgagctaaatcatctaaca 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||    
T  35594465 agttgataaaattgagcctcatgtttcatttcataccttgcataataacaaaaaaacctgagcctctagtttcattatctctaagctaaatcatctaaca 35594366  T
Q  343 ttgaagtgtttccactttcttctcttgttccattactctgcagaaagggaacaatggaagctttttctgttagttcacttcacataccaatagcacttga 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594365 ttgaagtgtttccactttcttctcttgttccattactctgcagaaagggaacaatggaagctttttctgttagttcacttcacataccaatagcacttga 35594266  T
Q  443 accacaaatcccattnnnnnnntatatgttcttcaactcacaagtgcattcaacacttccattaattcgtgggaacgcttcaaaattcaagcttttcacc 542  Q
    |||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35594265 accacaaatcccattaaaaaaatctatgttcttcaactcacaagtgcattcaacacttccattaattcgtgggaacgcttcaaaattcaagcttttcact 35594166  T
Q  543 gccttatcaccttctccattaacagagtctagtagtagtaaccttgaagtggatgatgaaccagaagatgaaacaggttcagagaaatttgactggtact 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35594165 gccttatcaccttctccattaacagagtctagtagtagtaaccttgaagtggatgatgaaccagaagttgaaacaggttcagagaaatttgactggtact 35594066  T
Q  643 cacagtggtatcctttgatgccaatatgtgatcttgacaaaag 685  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35594065 cacagtggtatcctttgatgccaatatgtgatcttgacaaaag 35594023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 401 - 685
Target Start/End: Complemental strand, 35568400 - 35568116
Alignment:
Q  401 agctttttctgttagttcacttcacataccaatagcacttgaaccacaaatcccattnnnnnnntatatgttcttcaactcacaagtgcattcaacactt 500  Q
    |||||||||| || ||||||||||||| |||||||||| | || |||||| ||||||       |  |||||||| || |||||| | ||||||||||||    
T  35568400 agctttttctctttgttcacttcacatcccaatagcacataaaacacaaaccccattaaaaaaatccatgttcttgaagtcacaaatccattcaacactt 35568301  T
Q  501 ccattaattcgtgggaacgcttcaaaattcaagcttttcaccgccttatcaccttctccattaacagagtctagtagtagtaaccttgaagtggatgatg 600  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35568300 ccattaattcgtgggaacacttcaaaattcaagcttttcactgccttatcaccttctccgttaacagagtctagtagtagtaaccttgaagtggatgatg 35568201  T
Q  601 aaccagaagatgaaacaggttcagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaag 685  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35568200 aaccagaagttgaaacaggttcagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaag 35568116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 401 - 685
Target Start/End: Complemental strand, 35583131 - 35582847
Alignment:
Q  401 agctttttctgttagttcacttcacataccaatagcacttgaaccacaaatcccattnnnnnnntatatgttcttcaactcacaagtgcattcaacactt 500  Q
    |||||||||| || ||||||||||||| |||||||||| | || |||||| ||||||       |  |||||||| || |||||| | ||||||||||||    
T  35583131 agctttttctcttcgttcacttcacatcccaatagcacataaaacacaaaccccattaaaaaaatccatgttcttgaagtcacaaatccattcaacactt 35583032  T
Q  501 ccattaattcgtgggaacgcttcaaaattcaagcttttcaccgccttatcaccttctccattaacagagtctagtagtagtaaccttgaagtggatgatg 600  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35583031 ccattaattcgtgggaacacttcaaaattcaagcttttcactgccttatcaccttctccgttaacagagtctagtagtagtaaccttgaagtggatgatg 35582932  T
Q  601 aaccagaagatgaaacaggttcagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaag 685  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35582931 aaccagaagttgaaacaggttcagagaaatttgactggtactcacagtggtatcctttgatgccaatatgtgatcttgacaaaag 35582847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 34615563 - 34615500
Alignment:
Q  62 gtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 125  Q
    |||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  34615563 gtggaaagggcatcattccactctctttccattccacccatctttctttccttggaaccaaaca 34615500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 6842339 - 6842243
Alignment:
Q  31 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 127  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6842339 tttccttagctttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccattccactcctctttctttccttggaaccaaacata 6842243  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 52462349 - 52462442
Alignment:
Q  35 cttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacatat 128  Q
    |||||||||||||||||||   ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  52462349 cttagctttatgaaggtgtaccaaacagtagaaagagcatcattccactctctttccattccactcctctttctttcgttggaaccaaacatat 52462442  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 46854348 - 46854312
Alignment:
Q  91 cattccactcctctttctttccttggaaccaaacata 127  Q
    |||||||||||||||||||||||||||||||||||||    
T  46854348 cattccactcctctttctttccttggaaccaaacata 46854312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 29322310 - 29322215
Alignment:
Q  31 tttccttagcttta-tgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 125  Q
    |||||||||||||  ||||||||||| |||   |||||||  |||||||||||| |||||||  |||||||  |||||||||| ||||| ||||||    
T  29322310 tttccttagcttttgtgaaggtgtgtcaaactatggaaaggacatcattccactctctttcccatccactcacctttctttccatggaatcaaaca 29322215  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 16491346 - 16491292
Alignment:
Q  71 gcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 125  Q
    ||||||||||||| ||||| ||| || ||| ||||||||||| ||||||||||||    
T  16491346 gcatcattccactctcttttcatccccctcatctttctttccatggaaccaaaca 16491292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 46854391 - 46854340
Alignment:
Q  31 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccact 83  Q
    |||||||||||| |||||||||||  ||| ||| |||||||||||||||||||    
T  46854391 tttccttagctt-atgaaggtgtgccaaacagtagaaagagcatcattccact 46854340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 3861 - 3957
Alignment:
Q  31 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 127  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3861 tttccttaactttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccattccactcctctttctttccttggaaccaaacata 3957  T

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Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 6149619 - 6149523
Alignment:
Q  31 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 127  Q
    |||||||| |||||||||||||||  ||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6149619 tttccttaactttatgaaggtgtgccaaacagtggaaagaatatcattccactctctttccattccactcctctttctttccttggaaccaaacata 6149523  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 46224714 - 46224808
Alignment:
Q  31 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 125  Q
    ||||||||||||| |||||||||   |||  |||||||| ||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||    
T  46224714 tttccttagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctcttttcattccacccatctttctttccttggaaccaaaca 46224808  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 22667979 - 22667885
Alignment:
Q  31 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 125  Q
    ||||| ||||||| |||||||||   |||  |||||||| ||||||||||||| |||||||||||||  | ||||||||||||||||||||||||    
T  22667979 tttccatagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctctttccattccatccatctttctttccttggaaccaaaca 22667885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 538
Target Start/End: Original strand, 26859934 - 26859991
Alignment:
Q  481 cacaagtgcattcaacacttccattaattcgtgggaacgcttcaaaattcaagctttt 538  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||||||||| ||||||||    
T  26859934 cacaattgcattcatcacatccattaattcgtgggaacacttcaaaatttaagctttt 26859991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 34376930 - 34376867
Alignment:
Q  62 gtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 125  Q
    |||||||| ||||||||||||| |||||||||||||  | ||||||||||||||||||||||||    
T  34376930 gtggaaagggcatcattccactctctttccattccatccatctttctttccttggaaccaaaca 34376867  T

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