View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15915_high_10 (Length: 201)
Name: NF15915_high_10
Description: NF15915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15915_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 30411240 - 30411070
Alignment:
| Q |
4 |
ctaccaaacccacgttcatcgacttgaccacttggatgaaagttcgttgtagcagttttaagctcattgattgtgaaacacttcaaattgttgcattgta |
103 |
Q |
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| T |
30411240 |
ctaccaaacccacgttcatccacttgaccgcttggatgaaagtacgtcgtagcagtttttagctcattgaatgtgaaacacttcaaattgttgcattgta |
30411141 |
T |
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| Q |
104 |
atatctcaccctcagtccttggagttagacgcacagatgaagaggatgccttgttactcaaaccattcaaa |
174 |
Q |
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| T |
30411140 |
atatctcaccctcagtctttgaagttagaagcacagatgaagaggatgccttgttgcttaaaccactcaaa |
30411070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 30408319 - 30408152
Alignment:
| Q |
1 |
accctaccaaacccacgttcatcgacttgaccacttggatgaaagttcgttgtagcagttttaagctcattgattgtgaaacacttcaaattgttgcatt |
100 |
Q |
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| T |
30408319 |
accctaccaaatccacgttcatcgagttcaccacttggatgaaagtttcttgtcgcagtttttacctcattgaatgtgaaacacttcaaattgttggatt |
30408220 |
T |
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| Q |
101 |
gtaatatctcaccctcagtccttggagttagacgcacagatgaagaggatgccttgttactcaaacca |
168 |
Q |
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| T |
30408219 |
gtaatatctcaccctcagtccttgaagttagcagaacagttgaagaggataccttgttgctcaaacca |
30408152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 30404464 - 30404343
Alignment:
| Q |
36 |
tggatgaaagttcgttgtagcagttttaagctcattgattgtgaaacacttcaaattgttgcattgtaatatctcaccctcagtccttggagttagacgc |
135 |
Q |
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| T |
30404464 |
tggatgaaagttccttgttgcggctcttacctcgttgatagtgaaacacgtcaaattgttggatcgcaatacctcatcctcagtcctagaagttagaggc |
30404365 |
T |
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| Q |
136 |
acagatgaagaggatgccttgt |
157 |
Q |
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| T |
30404364 |
acaaatgaagaggctgctttgt |
30404343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 30421292 - 30421212
Alignment:
| Q |
66 |
ctcattgattgtgaaacacttcaaattgttgcattgtaatatctcaccctcagtccttggagttagacgcacagatgaaga |
146 |
Q |
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| T |
30421292 |
ctcattgatagtgaaacacttcaaatagtttgattgcaatatctcaccctcggtcctagagcttagaagcacagatgaaga |
30421212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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